Gene
| Gene Model ID | pfu_aug2.0_4257.1_25915 |
|---|---|
| Locus | scaffold4257.1 : 5096 ... 9321 : + |
| To GenomeBrowser | scaffold4257.1:5096..9321 |
| Genes list of scaffold | scaffold4257.1 |
| Synonym | pfu_aug1.0_3454.1_08622 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4257.1_25915.t1 | 2 | 1 | zf-B_box | 48 | 84 | 7.1e-11 | 41.8 | 9.0e-06 | 0.027 | 14.3 |
| pfu_aug2.0_4257.1_25915.t1 | 2 | 2 | zf-B_box | 96 | 136 | 7.1e-11 | 41.8 | 1.4e-11 | 4.1e-08 | 32.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4257.1_25915.t1 | gi|432935259|ref|XP_004081997.1| | PREDICTED: E3 ubiquitin-protein ligase Midline-1-like isoform X2 [Oryzias latipes] | 6.0e-09 |
| pfu_aug2.0_4257.1_25915.t1 | gi|701328681|ref|XP_009976694.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM36 isoform X2 [Tauraco erythrolophus] | 6.0e-08 |
| pfu_aug2.0_4257.1_25915.t1 | gi|701328683|ref|XP_009976695.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM36 isoform X3 [Tauraco erythrolophus] | 8.0e-08 |
| pfu_aug2.0_4257.1_25915.t1 | gi|701328679|ref|XP_009976693.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM36 isoform X1 [Tauraco erythrolophus] | 1.0e-07 |
Transcript
| Transcript ID | pfu_aug2.0_4257.1_25915.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4257.1_25915.t1 atgcgctggtacaaggctgtagattggtcgagtacaaagccaagtggtgtacgtctggtgggagctaggtcatatccacg tgtagccctgatttcacaggcattgtctggtaagaatgagtgggaaaactgcattatcagtacccatggtaaagctgaat ggaaatgcatcaactgcggagatttctattgtgtggaatgtaaaaatcatcacgcaatgggcacaaaaacaggactgcat agattgttgcccttcagcgagaaagatactgaagatgcagtacgaaaagaggtcttctgtagacatcacgaggaaaggga attagatatgttctgcattacagacaaaatgcctatctgtgcacagtgtgaagcggctattgagcacagaggccatgaaa caaccacaatggtaaagtacgcagaagatacgagatatgaagtcggatcaacattgaccaaagccgacaaactcattcct gagtttgaaaataagctagagaagatagcaattgctaaaaagcaaatagatgccaacgatgaacatgttgatattattgt aaaggagaccataactaaacttcaacaaactgctttgaacttaaagacagttgagaagaagaaaatgaaaattttggaga aaagagaagagaaggtaacgaaagagaggagctcagttacgttgaaagtgttagaaactagaaagtttttagaaaactgc tcaaagaatgaaattgttcgacaagggcaaggctttattgaggacctcgaagcagtcataaaagattctagctcagagtc tgagatacaaattactcagttgactagagaagaaatttaccaggagctaaagaaactttaa |
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Protein
| Protein ID | pfu_aug2.0_4257.1_25915.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4257.1_25915.t1 MRWYKAVDWSSTKPSGVRLVGARSYPRVALISQALSGKNEWENCIISTHGKAEWKCINCGDFYCVECKNHHAMGTKTGLH RLLPFSEKDTEDAVRKEVFCRHHEERELDMFCITDKMPICAQCEAAIEHRGHETTTMVKYAEDTRYEVGSTLTKADKLIP EFENKLEKIAIAKKQIDANDEHVDIIVKETITKLQQTALNLKTVEKKKMKILEKREEKVTKERSSVTLKVLETRKFLENC SKNEIVRQGQGFIEDLEAVIKDSSSESEIQITQLTREEIYQELKKL |
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