Gene
| Gene Model ID | pfu_aug2.0_426.1_20757 |
|---|---|
| Locus | scaffold426.1 : 125856 ... 128845 : + |
| To GenomeBrowser | scaffold426.1:125856..128845 |
| Genes list of scaffold | scaffold426.1 |
| Synonym | pfu_aug1.0_4452.1_23579 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transmembrane emp24 domain-containing protein 2 isoform x2 | GO:0003723 GO:0004386 GO:0005524 GO:0006810 GO:0008152 GO:0016021 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_426.1_20757.t1 | 1 | 1 | EMP24_GP25L | 3 | 156 | 5.19994e-41 | 140.3 | 4.2039e-45 | 5.70006e-41 | 140.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_426.1_20757.t1 | gi|260834239|ref|XP_002612119.1| | hypothetical protein BRAFLDRAFT_127851 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_426.1_20757.t1 | gi|676455494|ref|XP_009054024.1| | hypothetical protein LOTGIDRAFT_203874 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_426.1_20757.t1 | gi|291235572|ref|XP_002737711.1| | PREDICTED: transmembrane emp24 domain-containing protein 2-like isoform 2 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_426.1_20757.t1 | gi|637316732|ref|XP_003222786.2| | PREDICTED: transmembrane emp24 domain-containing protein 2 isoform X2 [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_426.1_20757.t1 | gi|556954805|ref|XP_005988996.1| | PREDICTED: transmembrane emp24 domain-containing protein 2 isoform X2 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_426.1_20757.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_426.1_20757.t1 atgagccttatgtttgaagtagccgaaggtggcttcttagacatcgatgtcaagatttatggcccagatggtaaagtgat tcactctggtgacagagagtcaaacggtaaatacacgttcgctgctcacatggatggtgtatacaaatactgcttcagta acaagatgtcaacgatgacacctaaaattgttatgtttaccatggacgtaggagaaaaaccaaaagaacaggataataat atggagacagatgcccatcataacaagctagctgaaatgattaacgagttgtcaacagccttgactggcgtaaaacacga acaagaatacatggaagtcagagagaggattcatagagcaataaatgacaacactaactcccgagtggtgctatggtcat ttttcgaggctctagttctggttgccatgacattaggacaagtatactacctgaaaagatttttcgaagttcgaagagta gtctga |
|
Protein
| Protein ID | pfu_aug2.0_426.1_20757.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_426.1_20757.t1 MSLMFEVAEGGFLDIDVKIYGPDGKVIHSGDRESNGKYTFAAHMDGVYKYCFSNKMSTMTPKIVMFTMDVGEKPKEQDNN METDAHHNKLAEMINELSTALTGVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQVYYLKRFFEVRRV V |
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