Gene
| Gene Model ID | pfu_aug2.0_4260.1_02594 |
|---|---|
| Locus | scaffold4260.1 : 1 ... 28055 : - |
| To GenomeBrowser | scaffold4260.1:1..28055 |
| Genes list of scaffold | scaffold4260.1 |
| Synonym | pfu_aug1.0_1954.1_66161 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4260.1_02594.t1 | 4 | 1 | Ig_2 | 26 | 102 | 2.0e-18 | 66.2 | 2.3e-06 | 0.0069 | 16.4 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 1 | Ig_3 | 37 | 93 | 5.0e-13 | 49.3 | 8.1e-07 | 0.0024 | 18.3 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 1 | I-set | 38 | 68 | 3.2e-10 | 39.7 | 0.0044 | 13.0 | 5.7 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 1 | V-set | 39 | 64 | 2.0e-07 | 30.8 | 0.075 | 220.0 | 1.7 |
| pfu_aug2.0_4260.1_02594.t1 | 3 | 1 | ig | 43 | 63 | 6.2e-09 | 35.8 | 0.15 | 450.0 | 1.0 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 2 | Ig_3 | 223 | 264 | 5.0e-13 | 49.3 | 1.4e-06 | 0.0041 | 17.6 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 2 | Ig_2 | 227 | 278 | 2.0e-18 | 66.2 | 4.4e-10 | 1.3e-06 | 28.4 |
| pfu_aug2.0_4260.1_02594.t1 | 3 | 2 | ig | 232 | 262 | 6.2e-09 | 35.8 | 1.7e-06 | 0.0052 | 16.8 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 2 | V-set | 240 | 270 | 2.0e-07 | 30.8 | 5.4e-07 | 0.0016 | 18.3 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 2 | I-set | 243 | 267 | 3.2e-10 | 39.7 | 1.6e-06 | 0.0047 | 16.7 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 3 | Ig_3 | 404 | 437 | 5.0e-13 | 49.3 | 0.01 | 31.0 | 5.1 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 3 | Ig_2 | 408 | 473 | 2.0e-18 | 66.2 | 0.049 | 150.0 | 2.6 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 3 | I-set | 411 | 453 | 3.2e-10 | 39.7 | 1.0 | 3000.0 | -1.9 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 3 | V-set | 431 | 447 | 2.0e-07 | 30.8 | 2.0 | 5800.0 | -2.9 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 4 | Ig_3 | 514 | 554 | 5.0e-13 | 49.3 | 6.8e-08 | 0.0002 | 21.7 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 4 | Ig_2 | 515 | 567 | 2.0e-18 | 66.2 | 2.9e-10 | 8.7e-07 | 28.9 |
| pfu_aug2.0_4260.1_02594.t1 | 3 | 3 | ig | 520 | 551 | 6.2e-09 | 35.8 | 4.3e-07 | 0.0013 | 18.8 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 4 | I-set | 533 | 558 | 3.2e-10 | 39.7 | 2.5e-05 | 0.075 | 12.8 |
| pfu_aug2.0_4260.1_02594.t1 | 4 | 4 | V-set | 534 | 563 | 2.0e-07 | 30.8 | 3.6e-06 | 0.011 | 15.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4260.1_02594.t1 | gi|617467254|ref|XP_007574141.1| | PREDICTED: B-cell receptor CD22-like [Poecilia formosa] | 3.0e-08 |
| pfu_aug2.0_4260.1_02594.t1 | gi|548550142|ref|XP_005754978.1| | PREDICTED: B-cell receptor CD22-like [Pundamilia nyererei] | 2.0e-06 |
| pfu_aug2.0_4260.1_02594.t1 | gi|542243431|ref|XP_005458755.1| | PREDICTED: B-cell receptor CD22-like [Oreochromis niloticus] | 3.0e-06 |
| pfu_aug2.0_4260.1_02594.t1 | gi|584030009|ref|XP_006809499.1| | PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like [Neolamprologus brichardi] | 8.0e-06 |
| pfu_aug2.0_4260.1_02594.t1 | gi|658830612|ref|XP_008421330.1| | PREDICTED: B-cell receptor CD22-like [Poecilia reticulata] | 9.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_4260.1_02594.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4260.1_02594.t1 atgggagtgagaccaggtgcccaggcaattactgcagagagcaatgatgacaatgtaacactatctactgtcgttgtcaa caccagccctagtagaacgtattattatatagaagagaggaaaagacttcagataacatgtaccgctaactgtgacccgc catgtcagtatcagtggtatcaccgaaacttcgaagtccacggcagtgttctcaatgtgaacgtgaccaaggagatggac tatgacgcatatggaccactgctctgcctggcctctaatgaagaatcgggacctttcagttcacaagagatacgtatcta cgttcaaaatggtaaatttagaaaaattccatcatggatcgatattgaggaaggagaaacactaaccacctgcctgctgg aaaattctcatgagtgcgattggaactgtgatctgtatgatccattcggtcagctttataatggttatgatcagagttgt cacagcatccgcatggaacgatatcttagtggaaggtggtactggcactacaatggctatagtaacttctacttcacagt caatatctttatcacacccccaagtcatgtcttaattcctgatgaaagaaatataactgttaacggttcaaacagaagtg cactcggaccaattagattcgttggaagatgcagtccactctgtacctatgtttggtacaaagacaataacacattctcc tttggcaatacactgtacataaccaatgtggatacaagtgacagtggatactacgaatgtcgagtttacaatggtactga ggtgatagatatgacttcagttgacatatttgtctatgatgtcatggaagataataaagaaatatcaggaaataacactg gtgaatgcagtaagcgtccaagtcttgtagaatacagaaatcattatttcccgacagctaggcgtcttcagataagcttc tcagtcagggatacgtttgtgacaccgtcactgtggaagttcgatatggggaactcgtcatacactatgatgtccctctc cccagaatggtggacgatattctgtcttagaaccatccaaccacagtatatatttgtatcttccgaaatggaagtaaccg aatgtgacaattttaccgcattgaagcgacgggtgttgcatgcagcaagtgacatttattatgcttatattaaagatgga ccgaagaatataacactgactcagaatggaaatgtcaatgtagaggatggattaccattagttctcacagtaaatgctga ttgtaacccgccatgcagctacagtttgaatgatggttcgagttgggtaactgataatgataaatatcatacaactgttt caaaggctagcgaaggagtttggcaatggtacattcacaataggcatgcttccattcatcgaaaattcaaagtttttgta tgggaaccccatcaacttataccgagtgacttgttgtacaccgttgacaccaccaaatttgctgctaatagcattggtcc aatacggttcataggaatttgcaatccaaactgtacatacatctggtacaaggatggtgttccattctcccttggtaata ctcttctcattaacaacgtaaacaggaacgacagtggagaatattattgtgtgggcttcaatcaacagtataatgtaaca tcacactctataacgatcaattcaacag |
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Protein
| Protein ID | pfu_aug2.0_4260.1_02594.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4260.1_02594.t1 MGVRPGAQAITAESNDDNVTLSTVVVNTSPSRTYYYIEERKRLQITCTANCDPPCQYQWYHRNFEVHGSVLNVNVTKEMD YDAYGPLLCLASNEESGPFSSQEIRIYVQNGKFRKIPSWIDIEEGETLTTCLLENSHECDWNCDLYDPFGQLYNGYDQSC HSIRMERYLSGRWYWHYNGYSNFYFTVNIFITPPSHVLIPDERNITVNGSNRSALGPIRFVGRCSPLCTYVWYKDNNTFS FGNTLYITNVDTSDSGYYECRVYNGTEVIDMTSVDIFVYDVMEDNKEISGNNTGECSKRPSLVEYRNHYFPTARRLQISF SVRDTFVTPSLWKFDMGNSSYTMMSLSPEWWTIFCLRTIQPQYIFVSSEMEVTECDNFTALKRRVLHAASDIYYAYIKDG PKNITLTQNGNVNVEDGLPLVLTVNADCNPPCSYSLNDGSSWVTDNDKYHTTVSKASEGVWQWYIHNRHASIHRKFKVFV WEPHQLIPSDLLYTVDTTKFAANSIGPIRFIGICNPNCTYIWYKDGVPFSLGNTLLINNVNRNDSGEYYCVGFNQQYNVT SHSITINST |
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