Gene
| Gene Model ID | pfu_aug2.0_427.1_24020 |
|---|---|
| Locus | scaffold427.1 : 250024 ... 274905 : - |
| To GenomeBrowser | scaffold427.1:250024..274905 |
| Genes list of scaffold | scaffold427.1 |
| Synonym | pfu_aug1.0_105307.1_49591 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sodium- and chloride-dependent glycine transporter 2 | GO:0015293 GO:0016020 GO:0044765 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_427.1_24020.t1 | 3 | 1 | SNF | 39 | 73 | 0.0 | 554.3 | 2.4e-18 | 3.6e-14 | 52.1 |
| pfu_aug2.0_427.1_24020.t1 | 3 | 2 | SNF | 101 | 341 | 0.0 | 554.3 | 0.0 | 0.0 | 240.9 |
| pfu_aug2.0_427.1_24020.t1 | 3 | 3 | SNF | 343 | 585 | 0.0 | 554.3 | 0.0 | 0.0 | 268.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_427.1_24020.t1 | gi|676473619|ref|XP_009059877.1| | hypothetical protein LOTGIDRAFT_218886 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_427.1_24020.t1 | gi|241831523|ref|XP_002414864.1| | sodium-neurotransmitter symporter, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_427.1_24020.t1 | gi|260795789|ref|XP_002592887.1| | solute carrier family 6, member 5 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_427.1_24020.t1 | gi|686601517|ref|XP_009277043.1| | PREDICTED: sodium- and chloride-dependent glycine transporter 2 [Aptenodytes forsteri] | 0.0 |
| pfu_aug2.0_427.1_24020.t1 | gi|663245243|ref|XP_008503013.1| | PREDICTED: sodium- and chloride-dependent glycine transporter 2 isoform X1 [Calypte anna] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_427.1_24020.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_427.1_24020.t1 atggcattaaactgtgacaagagcttagcgacaaaagaatttgaactaaacgacccggaaaagacgagcgccatgtcgtc gactacggattccagcggcgacgagaacgctgagagagggaactggtccaggaaaatggacttcgtgctgtcctgtctgt cgtacgccgtgggcctggggaacgtgtggcgattcccatacgtctgctacagaaacggagctgatagggcttcttgtaga attcccaaaccaaagttgcctgtggaattcggtatagatatcggtcacataaccaggcatggtgcattcctgattccatt tatagtgatgttatttataacgggtatacctctagtattcctggagctgtcattcggtcagtttgccagctctggcgtag tttctatatggaaagcttcaccgattttccaaggtgtgggctgggccatgtttatagtgtcagtgctgatatgtatatac tacaacatgattatagcgtacaccctgtactacctctttgcctcgtttgcagctgtattaccttggaacgaatgtgggtc gtgggccacagaagcttgcgccacagagaatcaaactctgagaaatgcatataagaagtgcaccactcttggtttatcat ggtgtaacgatgcatgttacaatctgtcgacagtggacaacggaacgctggctaatttaacgtgtacagaatatgggaaa ggactcaaatcgcccagtgatgagtactttcatgagagtgtgttagacatcacatcaggggtacattctatgggagttat taggtgggaattagctggatgtttgctggtggcgtggataatggtagccgtttgtctggccaagggcatcaaaacctcag gaaaggcagtatacttcacggcatttttcccgtacgtcgtactgttgatcctgttgatacgtgccctaactctggaaggt tctgttgatggcattatctactacttcaaaccacagtgggacaaattgggcacggcaaaggtaaaaataatcggggatgc gattattgtgtcggttcttgactgcgtcaccagtgtatttgccggtctcgtcatcttcagtattatcggttatatggctg cccaactacagattgatattgataaagtcgcatctgaaggcgctgggcttgcgtttgtggtgtaccctgaggtagtgaag aaactgcctatatcacagctctgggccgttctatttttctccatgctggtcactcttggtcttggcacacaaattgccac ggtaaccactgtacataccacattacttgaccagttcccccacttattccgtcgtggaaagagaaagttcctactactgg ttgccatagcgatcgtctgctatctaattggactggtattctgtactcagggaggtatgttcattctacagttgttcgat aactacgcagccacatactcgttactatttataggaatggtggaatccctagctgtagcctacgtctatggagctgacag gtttctgacagatatagaacagatgttaggctggcgtcctcatgacgcatggaagtactcctggaagtttgtggcccctg tagcattgttgtttatcatgatctttacgtgggtggatttcaagccgtctagctacaacacgtacgtcttcccaggctgg gctgatggagtcggctttatgctgtctataatgtccatacttgccatccctatcactgctatatatatgatactgatgaa gaggcgtaattataacggtacctttatacagatgttgaaggaacttagcagacccgcagatgattggggtccaagtctca aagagcacaaagtagctcggcaaatgatggagcatcctaaccagcagtttgagtcacagttacccctcaccatgggctca aaactcagtaacgatcaacaataccaaaatggtgactcgaagatataa |
|
Protein
| Protein ID | pfu_aug2.0_427.1_24020.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_427.1_24020.t1 MALNCDKSLATKEFELNDPEKTSAMSSTTDSSGDENAERGNWSRKMDFVLSCLSYAVGLGNVWRFPYVCYRNGADRASCR IPKPKLPVEFGIDIGHITRHGAFLIPFIVMLFITGIPLVFLELSFGQFASSGVVSIWKASPIFQGVGWAMFIVSVLICIY YNMIIAYTLYYLFASFAAVLPWNECGSWATEACATENQTLRNAYKKCTTLGLSWCNDACYNLSTVDNGTLANLTCTEYGK GLKSPSDEYFHESVLDITSGVHSMGVIRWELAGCLLVAWIMVAVCLAKGIKTSGKAVYFTAFFPYVVLLILLIRALTLEG SVDGIIYYFKPQWDKLGTAKVKIIGDAIIVSVLDCVTSVFAGLVIFSIIGYMAAQLQIDIDKVASEGAGLAFVVYPEVVK KLPISQLWAVLFFSMLVTLGLGTQIATVTTVHTTLLDQFPHLFRRGKRKFLLLVAIAIVCYLIGLVFCTQGGMFILQLFD NYAATYSLLFIGMVESLAVAYVYGADRFLTDIEQMLGWRPHDAWKYSWKFVAPVALLFIMIFTWVDFKPSSYNTYVFPGW ADGVGFMLSIMSILAIPITAIYMILMKRRNYNGTFIQMLKELSRPADDWGPSLKEHKVARQMMEHPNQQFESQLPLTMGS KLSNDQQYQNGDSKI |
|