Gene
| Gene Model ID | pfu_aug2.0_4278.1_29264 |
|---|---|
| Locus | scaffold4278.1 : 701 ... 3735 : - |
| To GenomeBrowser | scaffold4278.1:701..3735 |
| Genes list of scaffold | scaffold4278.1 |
| Synonym | pfu_aug1.0_10345.1_39033 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4278.1_29264.t1 | 2 | 1 | C1q | 3 | 124 | 3.4e-40 | 136.9 | 2.5e-22 | 7.4e-19 | 67.9 |
| pfu_aug2.0_4278.1_29264.t1 | 2 | 2 | C1q | 163 | 283 | 3.4e-40 | 136.9 | 2.0e-23 | 6.1e-20 | 71.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4278.1_29264.t1 | gi|700419630|ref|XP_009947968.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 [Leptosomus discolor] | 2.0e-10 |
| pfu_aug2.0_4278.1_29264.t1 | gi|471412448|ref|XP_004387773.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 [Trichechus manatus latirostris] | 3.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_4278.1_29264.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4278.1_29264.t1 atggtagctttcacagcttgtcattctaaaggttctacaattggagttcttcagacggtcatctacgatcatataataac aaacataggaaacgcttacgatgtcagggatggagagttcaatgtgccatatgatggactatacacattttctgtcaccg gaatggcatactccgattctaatatgtaccttaatttactcaaaaatgggatgtttgttcagaggatgtatagtaatatt ggatacgctgattcctccgcctttacagcgaatctatatctccaagctggtgataaaatttggatagtcaatggcggata tggcagtgaccatcttcatcctggcaattataactgcttctctggaatgctttccaaagaaaaggctccagaaagaatat ctacattggaaggaaaaggtaataatttgtacttcatagtcgaaaatcttatttcagccaacaattccacccagcatatg gttggtttcacagcttgccattctaaaggatctactttcgctgcatatcagacgatcatatacgatcatatcataacaaa catcggaaacgcttacgatgtcagggatggagagttcaacgtgccatatgatggactatacacattcaccgtcacaggaa tggcatactccaatactgaaatgtactttactttattgaaaaatggcgtctacgttcagaagatgtatagtaacttagac accagcgacacctctgcctttaccacgaatctttatcttcaagccggtgacgcaatttgggtagtcaatggcgggcatga ttctggacatcttcatcctaataattataattgcttctccggtatgcttgccaaggaaaagtattaa |
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Protein
| Protein ID | pfu_aug2.0_4278.1_29264.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4278.1_29264.t1 MVAFTACHSKGSTIGVLQTVIYDHIITNIGNAYDVRDGEFNVPYDGLYTFSVTGMAYSDSNMYLNLLKNGMFVQRMYSNI GYADSSAFTANLYLQAGDKIWIVNGGYGSDHLHPGNYNCFSGMLSKEKAPERISTLEGKGNNLYFIVENLISANNSTQHM VGFTACHSKGSTFAAYQTIIYDHIITNIGNAYDVRDGEFNVPYDGLYTFTVTGMAYSNTEMYFTLLKNGVYVQKMYSNLD TSDTSAFTTNLYLQAGDAIWVVNGGHDSGHLHPNNYNCFSGMLAKEKY |
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