Gene
| Gene Model ID | pfu_aug2.0_432.1_07512 |
|---|---|
| Locus | scaffold432.1 : 204970 ... 231974 : - |
| To GenomeBrowser | scaffold432.1:204970..231974 |
| Genes list of scaffold | scaffold432.1 |
| Synonym | pfu_aug1.0_10097.1_24678 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_432.1_07512.t1 | 3 | 1 | Ldl_recept_b | 1 | 41 | 2.2e-18 | 66.2 | 1.1e-08 | 4.1e-05 | 23.8 |
| pfu_aug2.0_432.1_07512.t1 | 3 | 2 | Ldl_recept_b | 44 | 83 | 2.2e-18 | 66.2 | 1.1e-09 | 3.9e-06 | 27.0 |
| pfu_aug2.0_432.1_07512.t1 | 3 | 3 | Ldl_recept_b | 86 | 124 | 2.2e-18 | 66.2 | 2.6e-05 | 0.095 | 13.0 |
| pfu_aug2.0_432.1_07512.t1 | 7 | 1 | Ldl_recept_a | 131 | 147 | 1.4013e-45 | 153.3 | 0.099 | 370.0 | 1.1 |
| pfu_aug2.0_432.1_07512.t1 | 7 | 2 | Ldl_recept_a | 179 | 217 | 1.4013e-45 | 153.3 | 4.1e-12 | 1.5e-08 | 34.3 |
| pfu_aug2.0_432.1_07512.t1 | 7 | 3 | Ldl_recept_a | 221 | 256 | 1.4013e-45 | 153.3 | 1.5e-13 | 5.7e-10 | 38.9 |
| pfu_aug2.0_432.1_07512.t1 | 7 | 4 | Ldl_recept_a | 258 | 293 | 1.4013e-45 | 153.3 | 6.3e-10 | 2.4e-06 | 27.3 |
| pfu_aug2.0_432.1_07512.t1 | 7 | 5 | Ldl_recept_a | 314 | 339 | 1.4013e-45 | 153.3 | 3.0e-09 | 1.1e-05 | 25.1 |
| pfu_aug2.0_432.1_07512.t1 | 7 | 6 | Ldl_recept_a | 344 | 380 | 1.4013e-45 | 153.3 | 3.3e-14 | 1.2e-10 | 41.0 |
| pfu_aug2.0_432.1_07512.t1 | 7 | 7 | Ldl_recept_a | 384 | 405 | 1.4013e-45 | 153.3 | 7.0e-09 | 2.6e-05 | 24.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_432.1_07512.t1 | gi|676450929|ref|XP_009052539.1| | hypothetical protein LOTGIDRAFT_143634 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_432.1_07512.t1 | gi|260820014|ref|XP_002605330.1| | hypothetical protein BRAFLDRAFT_120630 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_432.1_07512.t1 | gi|195149514|ref|XP_002015702.1| | GL11210 [Drosophila persimilis] | 0.0 |
| pfu_aug2.0_432.1_07512.t1 | gi|198456290|ref|XP_002138212.1| | GA24641 [Drosophila pseudoobscura pseudoobscura] | 0.0 |
| pfu_aug2.0_432.1_07512.t1 | gi|170035892|ref|XP_001845800.1| | very low-density lipoprotein receptor [Culex quinquefasciatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_432.1_07512.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_432.1_07512.t1 atgttttggacaaactggaacgatttccacccgaccatccagcgagcattcttcagtggctataatgccacctccatcat cactaaggacatacggacacctaacggcttgaccatcgaccacaaggctcagagactgtactggtcagatgccagactgg acaagatcgaacgctgcgattttgatggaaataacagagagataatagtaacgaccatcccgcagcactcatttggcctg gctttgtacggagagtatttatactggactgattggatgagacgtgcggtggtgagagccaataaacacgatggtaacat ctacacctacctcaggaaaggattacagagacagccaatgggaatcgctgttgtagctgaggatgctaacgactgcacca caaacccatgtctcaacaacattctacagtgtgaaggaaaatgtcaagttacaccacgtcatgtaccgtattgtaaatgt gaaccaccgaaagtgctcgcagaggatggtgttagatgtataagacaagaacttcactgtggagtgaatgattttgtgtg tcatgatgggtccaagtgttttcccagaattcaagtttgtaatggtgtcacggactgcctggacgggagtgacgagttta gagctgtctgcaataaggaggaatgtggacctggattctacacttgcaaaaatcaccagtgtgcttcattgaacgcacgg tgtgacggcactccaaactgcatggacggatcagacgagaaagattgtctgtgtcaagaaggccagtttaagtgcgtttc cgaggacaagtgcgttgacaataaattcgtgtgcgactttgaccctgattgtatagatcattcagacgagatgggatgca actgttctaaggaggagatatttgcaaacgagggtgaagtagcagtgtcgtgtaacctaacttctcagtgcattctgccg agctggatttgtgacggcaaaatggactgttataataatacagatgaacttaactgtccgaacgaaacaaactgcagtga ctcaggatttcagtgtaacgatggagcatgtatcccgttgccatggagatgtgacggtgatgtagactgtccagataatt cagatgagggagaggagtgtgaccagctctgtttaccccagtcatggcagtgcgacagctatcccgactgtcctaacggc acagatgaactcgagtcgatatgcaattacaactatcataacaaatgcattatcttctatatagccatgatgacaggaat gcgccctaatgtcgtaacatttctagagcttttccatctacactggtcactgtatgactttgcttatagaaagaaacttt tgatggaaatgagttcgctgaatatttttccagacgtgccgatacttcgcaaattgaagacaataaacaaaaaggtcagc agggatttattagaacaggaaaatggtatgataaaggctggatgcgacgataaaccttacatcagccgtgaagaatttga agacttcatgaccttctacaacgagtggctggcaatgtacaatttgcaatcatag |
|
Protein
| Protein ID | pfu_aug2.0_432.1_07512.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_432.1_07512.t1 MFWTNWNDFHPTIQRAFFSGYNATSIITKDIRTPNGLTIDHKAQRLYWSDARLDKIERCDFDGNNREIIVTTIPQHSFGL ALYGEYLYWTDWMRRAVVRANKHDGNIYTYLRKGLQRQPMGIAVVAEDANDCTTNPCLNNILQCEGKCQVTPRHVPYCKC EPPKVLAEDGVRCIRQELHCGVNDFVCHDGSKCFPRIQVCNGVTDCLDGSDEFRAVCNKEECGPGFYTCKNHQCASLNAR CDGTPNCMDGSDEKDCLCQEGQFKCVSEDKCVDNKFVCDFDPDCIDHSDEMGCNCSKEEIFANEGEVAVSCNLTSQCILP SWICDGKMDCYNNTDELNCPNETNCSDSGFQCNDGACIPLPWRCDGDVDCPDNSDEGEECDQLCLPQSWQCDSYPDCPNG TDELESICNYNYHNKCIIFYIAMMTGMRPNVVTFLELFHLHWSLYDFAYRKKLLMEMSSLNIFPDVPILRKLKTINKKVS RDLLEQENGMIKAGCDDKPYISREEFEDFMTFYNEWLAMYNLQS |
|