Gene
Gene Model ID | pfu_aug2.0_432.1_07513 |
---|---|
Locus | scaffold432.1 : 234421 ... 292274 : - |
To GenomeBrowser | scaffold432.1:234421..292274 |
Genes list of scaffold | scaffold432.1 |
Synonym | pfu_aug1.0_44881.1_41335 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
low-density lipoprotein receptor-related protein 1-like | GO:0005515 GO:0005886 GO:0006897 GO:0007166 GO:0008152 GO:0009968 GO:0016021 GO:0032370 GO:0032374 GO:0043231 GO:0044444 GO:0046872 GO:0048731 GO:0051128 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_432.1_07513.t1 | 8 | 1 | Ldl_recept_a | 13 | 50 | 0.0 | 203.7 | 2.0e-11 | 7.3e-08 | 32.1 |
pfu_aug2.0_432.1_07513.t1 | 8 | 2 | Ldl_recept_a | 75 | 110 | 0.0 | 203.7 | 3.5e-08 | 0.00013 | 21.7 |
pfu_aug2.0_432.1_07513.t1 | 10 | 1 | FXa_inhibition | 117 | 142 | 2.8e-25 | 88.1 | 0.15 | 570.0 | 0.7 |
pfu_aug2.0_432.1_07513.t1 | 9 | 1 | cEGF | 136 | 155 | 2.9e-06 | 26.7 | 0.012 | 45.0 | 3.8 |
pfu_aug2.0_432.1_07513.t1 | 10 | 2 | FXa_inhibition | 162 | 194 | 2.8e-25 | 88.1 | 9.0e-08 | 0.00034 | 20.6 |
pfu_aug2.0_432.1_07513.t1 | 9 | 2 | cEGF | 177 | 194 | 2.9e-06 | 26.7 | 9.0e-06 | 0.033 | 13.8 |
pfu_aug2.0_432.1_07513.t1 | 18 | 1 | Ldl_recept_b | 219 | 230 | 0.0 | 209.1 | 2.2 | 8200.0 | -2.8 |
pfu_aug2.0_432.1_07513.t1 | 18 | 2 | Ldl_recept_b | 342 | 365 | 0.0 | 209.1 | 0.23 | 860.0 | 0.3 |
pfu_aug2.0_432.1_07513.t1 | 18 | 3 | Ldl_recept_b | 369 | 390 | 0.0 | 209.1 | 0.0067 | 25.0 | 5.2 |
pfu_aug2.0_432.1_07513.t1 | 10 | 3 | FXa_inhibition | 468 | 492 | 2.8e-25 | 88.1 | 5.3e-05 | 0.2 | 11.8 |
pfu_aug2.0_432.1_07513.t1 | 9 | 3 | cEGF | 485 | 499 | 2.9e-06 | 26.7 | 0.0002 | 0.76 | 9.4 |
pfu_aug2.0_432.1_07513.t1 | 10 | 4 | FXa_inhibition | 513 | 538 | 2.8e-25 | 88.1 | 0.0002 | 0.76 | 9.9 |
pfu_aug2.0_432.1_07513.t1 | 9 | 4 | cEGF | 530 | 544 | 2.9e-06 | 26.7 | 0.0002 | 0.76 | 9.4 |
pfu_aug2.0_432.1_07513.t1 | 8 | 3 | Ldl_recept_a | 569 | 604 | 0.0 | 203.7 | 3.3e-11 | 1.2e-07 | 31.4 |
pfu_aug2.0_432.1_07513.t1 | 10 | 5 | FXa_inhibition | 570 | 595 | 2.8e-25 | 88.1 | 4.0 | 15000.0 | -5.2 |
pfu_aug2.0_432.1_07513.t1 | 8 | 4 | Ldl_recept_a | 607 | 649 | 0.0 | 203.7 | 1.1e-10 | 4.0e-07 | 29.8 |
pfu_aug2.0_432.1_07513.t1 | 10 | 6 | FXa_inhibition | 645 | 655 | 2.8e-25 | 88.1 | 0.7 | 2600.0 | -1.4 |
pfu_aug2.0_432.1_07513.t1 | 8 | 5 | Ldl_recept_a | 653 | 690 | 0.0 | 203.7 | 7.5e-10 | 2.8e-06 | 27.1 |
pfu_aug2.0_432.1_07513.t1 | 8 | 6 | Ldl_recept_a | 699 | 732 | 0.0 | 203.7 | 1.1e-13 | 4.2e-10 | 39.3 |
pfu_aug2.0_432.1_07513.t1 | 8 | 7 | Ldl_recept_a | 738 | 772 | 0.0 | 203.7 | 6.1e-16 | 2.3e-12 | 46.6 |
pfu_aug2.0_432.1_07513.t1 | 8 | 8 | Ldl_recept_a | 787 | 811 | 0.0 | 203.7 | 6.1e-07 | 0.0023 | 17.8 |
pfu_aug2.0_432.1_07513.t1 | 9 | 5 | cEGF | 816 | 820 | 2.9e-06 | 26.7 | 1.6 | 6000.0 | -3.0 |
pfu_aug2.0_432.1_07513.t1 | 10 | 7 | FXa_inhibition | 828 | 861 | 2.8e-25 | 88.1 | 1.2e-06 | 0.0045 | 17.0 |
pfu_aug2.0_432.1_07513.t1 | 9 | 6 | cEGF | 844 | 863 | 2.9e-06 | 26.7 | 2.4e-08 | 8.9e-05 | 22.0 |
pfu_aug2.0_432.1_07513.t1 | 18 | 4 | Ldl_recept_b | 908 | 950 | 0.0 | 209.1 | 4.8e-06 | 0.018 | 15.3 |
pfu_aug2.0_432.1_07513.t1 | 18 | 5 | Ldl_recept_b | 953 | 994 | 0.0 | 209.1 | 1.2e-10 | 4.4e-07 | 30.1 |
pfu_aug2.0_432.1_07513.t1 | 18 | 6 | Ldl_recept_b | 1063 | 1105 | 0.0 | 209.1 | 4.8e-06 | 0.018 | 15.3 |
pfu_aug2.0_432.1_07513.t1 | 18 | 7 | Ldl_recept_b | 1108 | 1149 | 0.0 | 209.1 | 1.2e-10 | 4.4e-07 | 30.1 |
pfu_aug2.0_432.1_07513.t1 | 18 | 8 | Ldl_recept_b | 1153 | 1177 | 0.0 | 209.1 | 3.6e-06 | 0.013 | 15.7 |
pfu_aug2.0_432.1_07513.t1 | 10 | 8 | FXa_inhibition | 1214 | 1250 | 2.8e-25 | 88.1 | 2.1e-13 | 7.7e-10 | 38.7 |
pfu_aug2.0_432.1_07513.t1 | 9 | 7 | cEGF | 1246 | 1251 | 2.9e-06 | 26.7 | 2.8 | 11000.0 | -3.8 |
pfu_aug2.0_432.1_07513.t1 | 18 | 9 | Ldl_recept_b | 1306 | 1346 | 0.0 | 209.1 | 1.1e-05 | 0.041 | 14.2 |
pfu_aug2.0_432.1_07513.t1 | 18 | 10 | Ldl_recept_b | 1361 | 1394 | 0.0 | 209.1 | 7.5e-05 | 0.28 | 11.5 |
pfu_aug2.0_432.1_07513.t1 | 18 | 11 | Ldl_recept_b | 1397 | 1424 | 0.0 | 209.1 | 0.015 | 54.0 | 4.2 |
pfu_aug2.0_432.1_07513.t1 | 18 | 12 | Ldl_recept_b | 1443 | 1483 | 0.0 | 209.1 | 0.00049 | 1.8 | 8.9 |
pfu_aug2.0_432.1_07513.t1 | 10 | 9 | FXa_inhibition | 1533 | 1561 | 2.8e-25 | 88.1 | 1.2e-08 | 4.3e-05 | 23.5 |
pfu_aug2.0_432.1_07513.t1 | 9 | 8 | cEGF | 1554 | 1564 | 2.9e-06 | 26.7 | 0.0096 | 36.0 | 4.1 |
pfu_aug2.0_432.1_07513.t1 | 18 | 13 | Ldl_recept_b | 1617 | 1657 | 0.0 | 209.1 | 0.054 | 200.0 | 2.3 |
pfu_aug2.0_432.1_07513.t1 | 18 | 14 | Ldl_recept_b | 1660 | 1701 | 0.0 | 209.1 | 3.9e-08 | 0.00014 | 22.0 |
pfu_aug2.0_432.1_07513.t1 | 18 | 15 | Ldl_recept_b | 1704 | 1730 | 0.0 | 209.1 | 9.8e-07 | 0.0036 | 17.5 |
pfu_aug2.0_432.1_07513.t1 | 18 | 16 | Ldl_recept_b | 1754 | 1784 | 0.0 | 209.1 | 2.4e-05 | 0.089 | 13.1 |
pfu_aug2.0_432.1_07513.t1 | 18 | 17 | Ldl_recept_b | 1806 | 1813 | 0.0 | 209.1 | 0.25 | 910.0 | 0.2 |
pfu_aug2.0_432.1_07513.t1 | 10 | 10 | FXa_inhibition | 1857 | 1891 | 2.8e-25 | 88.1 | 4.5e-09 | 1.7e-05 | 24.8 |
pfu_aug2.0_432.1_07513.t1 | 9 | 9 | cEGF | 1875 | 1895 | 2.9e-06 | 26.7 | 0.2 | 750.0 | -0.2 |
pfu_aug2.0_432.1_07513.t1 | 18 | 18 | Ldl_recept_b | 1942 | 1964 | 0.0 | 209.1 | 0.0031 | 11.0 | 6.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_432.1_07513.t1 | gi|74181737|dbj|BAE32580.1| | unnamed protein product [Mus musculus] | 0.0 |
pfu_aug2.0_432.1_07513.t1 | gi|512832233|ref|XP_004882397.1| | 0.0 | |
pfu_aug2.0_432.1_07513.t1 | gi|528493286|ref|XP_002663730.3| | PREDICTED: low-density lipoprotein receptor-related protein 1-like [Danio rerio] | 0.0 |
pfu_aug2.0_432.1_07513.t1 | gi|723122920|ref|XP_010290280.1| | PREDICTED: low-density lipoprotein receptor-related protein 1B, partial [Phaethon lepturus] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_432.1_07513.t1 |
---|---|
Definition | - |
>pfu_aug2.0_432.1_07513.t1 atgatatttattttagtgtcaccaaacgaagaagcatgtgattatgttggttggttccgttgtaaagatgatggagagtg catccctgaagattggcattgtgatggtgcggaagactgtgaagatgggtctgatgagggaataaattgtataaacactg agactacaaggagaagaagatctacatatcatacaaatttagataagaatttatatatcccgtgtccaccgaactacgag aggtgcccacgagaacaacaatgcattccaatagcaaaattctgtgataatagtgaggactgccccaaaggtggtgacga attaaaatgcaatacaaattacacaaataacaattgtgaaagcttacagtgtgagtacaactgcactaaaaccaaagatg ggccacggtgctactgccctgagggcaagaggcccaatgggactatctgctcagattttgatgagtgtgaatacagagat tttttctgcaaccaattatgcagcaagcctaatgatctcagtaaaccttacatgtgtgaatgtgtagatgggtatagact agctgatgacaataaaacgtgcctagccaataatgtgccaaaacgtgacgatgcaactttacttattgcggattttgacc gtttactttatatacatctgaatgggaagccgtataagccactgattaatgttataggagaatatataacatctgtagac tacaaccatagaaatcaaaccatatgctggatatcctttagtcgcagcagtaaacgttcggagatgagatgtcggaaagt tggagacagttcacagatatggacgttggaaacctcattcaatcttgacactgtaagctacatggcccaggattggctta caaacaattggtattttgtggacagcgtataccagagggtcatcctatgtaattcgatggcgtctatgtgtcgcagggtc ctcaagtttgacggagagagtaaacccaaggcagtggctctggatccaaatgaaggagctttattagacggttcagaatt gcaggaaatcgcaagcgacaaaatcgtgtcaccgtcttctattatgatagattacgccaacaaacacttgtactggggag acacggggcttaacatcattgagagaataagatacgatggctcggaaagatttatcaatagacacttacctggttatcca gcgaaggagtttggtctgtccatgatggagaattatatctacgttactaaggacacgaccttgtttaagatggaccgcac caatgtcagcaaacccaacattccaatcaacgtgtcacttcataatccattccaggtacttgtgtaccatcgccaacggc aaccagttatcacagacatatcagcaaactgttcggcactacagtgtaaacatttatgcattccaatacaacaaaacgga actctagtagcgacttgcgcctgtcgtcaggggtatatagcggaaggcaatgactgtaaaattatcacagacatatcagc aaactgttcggcactacagtgtaaacatttatgcattccaatacaacagaacggaactctagtagccacttgtgcctgtc gtcaggggtatatagcggaaggcaatgactgtaaaattcactgctcaggcaatagtacagtcagtgatccaggcacaccc atagaagactgccaactcaaccaagagtgttcagataattacatacgttgcccacacgcgggatgcattcctagtctatg gtactgtgataatggggcagactgtgatgatggctttgatgaaaaacaatgttccggccgctgtgatccaatcagagaat tccagtgtaagagcggaggttgtatatctatagactatagatgtgacggaatcccgaactgtgattttgtcagtgccgtg catgatctctcagatgaggagggttgtcagaatttctgtgacgcggctacggagtttgactgtaacaccaccgcccctcg ctgtctgccagttatttatagatgtgatggtgaaaaagactgctcaaacggaattgacgaggaaaattgtggtaatcatc cagtcttcaagatctgtgaggagacaacagaattccagtgtacagacgggacatgtataccaagcgtttggcgatgtgac ggagaaagtgattgtgacgacgggtcagacgaacaatgccataacataagttgtaagccaagtgagtttcagtgcgatac aaagcgttgtataccgtcagtatggaaatgtgataaagaacacgactgtgaagataaatcggatgaaaaaaattgcgatt atgacgttttgaattgcacatatccaaacttgtggtgtggaaagtgtattacaccagacaaatactgtgacaggaataaa gactgtacagataattctgatgaaacggggtgcaacaacacactaaagaattgtactgatttgaatctcgataaatccca aatgtgtgacacgtactgccacttggcccctatggcactacgatccaagtatgtgtgctcatgtaaagctggctttactc tgagagacgataatcacacttgtcaagatacagtccctgtttatgctattttctccaacagacacgagatgcgacgagtc gacttgttgagctataattacgcagccctagtatcaggattacataacacgatagcgttagatttccattataataagag taacatttattggacggatgtcgttgatgataaaatataccgaggaaggatgacgtcaaacagtctgatagatgttgagc caatcgtagatgttggtttagccacgaccgaaggacttgccatcgattggataggtaacaatctgtactgggtcgagagc aatctagatcaaatcgaagtcgcaagtctggacaatgtgggaatgaggacgaccctcgtagctggaaatatgtacagtcc tagagccatagtactggatcctagattgggctataactacttagcactagtaataataatagaatttacaaacgtatttt gtttccttacagataccgtccctgtgtatgctattttctccaacagacacgagatgcgacgagtcgacttgttgagctat aattacgcagctctggtatcaggattacataacacgatagcgttagatttccattataataagagtaacatttattggac ggatgttgttgacgataaaatatacagaggaaggatgacgtcaaacagtctgattgatgttgagccaatcgtagatgttg gtttagccacgaccgaaggacttgccatcgattggataggtaacaatctgtactgggtcgagagcaatctagatcaaatc gaagtcgcaagtctggacaatgtgggaatgaggacaaccctcgtagctggaaatatgtacagtcctagagccatagtact ggatcctagattggggatgttgttttggacagactgggagtcggacaatccgaggattgagtgtagttctatgtcgggag aggagaggaaggcaaacaagtttgatggctccaatgtaacagtcattcagcaaaccatcacacaaccgtttgatctacaa gtgtaccatccaaaacggcaaccaaacgccgttaatccgtgtaaggagaataatggaggatgctcgcatctgtgtctgat caattttaatcagaaagcgggctgtaaatgtcctcatctatggaaactgaaaaaagacggaaaaacgtgtgagagagaca tgagttttctattgttcggcaaaaataacgaaatccgtggagtggaccttgtcaacgcaaactacagtgtcatgccgacc attacattaccgcatgtaaaccgaccaatcgctgtggactttgatattggcattgcggcagatgcatcagaggaaggtcg gatattgtgggcggacgaggggttaaaggtcatcaacagtgcacttatcaacggatcttctgtagatacaataattgact cgggaattgccagtcttggtggatttgctgttgattggttgtccaaaaatatgtatttttcatcatacgacgagaacgct aagaagggaagcatttctgtttcaaagctgaacggagcgtacagagtggaaattctaatgaacccagacgtgataaatcc tggagcaatagcactggatccaattaagggtaacttgtattggtgtgagcttggatatgcattgggacagcagaaaatca tgagggcaaaaatggacggttcgggaatcgagaccctatacaatatgtcatctaatcctaccagtttaaatgtggattat gccagcggcaaagtctattggatagaaggcttcaataaaacaatcatggtctgcaatcttatcaacaaaaattgttctgc cttgcaagtggatcaaaacattaaaagtccatccgcaataaccgtatttatgtcaaagacgctatacgtggcacatgaca aataccttgcaagcatgagccagggcggaaaaaattacaccatgttgcgagatgaaacgacggcagtcaaatatttacgt gtgtatgacatcagcagtagatcaggttccaatgcatgctcaaagcagaacggaaattgctctcagctgtgtattcccac aggaccaaacatgcgggattgtcgatgtacggcaggatatcgtcgtttaaacaccgtaaaatgctcaggcatagagaaat tcctgatatacacaagtgacacagagattcgaggtttgtcgtttgattcgtcagacaaatctgaagctctaccgctcata tcacggatcaagaaagccggctctgtggatttccatgcagatggtgatcatatttattgggttgacaagacttcttctgt tgaaattactcggattaaacgggatctgacaggacgagaaacaatcatttccgaggaggaaagtgacgtaacttctattg ctgtagactggatcgcaggacacctttactggactgacgctcaacagaaaatcatagaagtcgtcaaagtagacaatcca tctgtacgctatatcatactatacactgacctggaatatcctacctctgtcatagtagacccattgaaaggaaaagttta ttggattgactccgggagatttccaaaaatagaaatggccaatctagacgggtcaggtcataaaaaactcgtagaaaatg tgacgattgagaactcagacaaacagggttgggttggattggcaaaggacttcaacgataataaactgtactggtgcgac aacatcgaagaaaagttgatggtgcttgatttagaggggtcagatcggcaggctaagatgcttctgaatttgagtgacgt aagtgggcggagccccgatgattgggactgccagtctgtcactgtacatgatgattttgtctactggattgacttggcta ttgacactggtgttataagagcagtcaacaaaaatacaaagtcggtgaccacaggatggacggggttatctcctaacatg catagcctccggacctttgatagcagcatacaaacaggctcaaatccttgcaaagtaaacaatggtgaatgtaaagatct gtgcttttatgacggaaaaagtgtgacttgtgcatgttcctacggggtattgactgaggacggcaaaggttgcacagatc acgacagtttcctgttctactccaaggtgacttccatagaaagcttacacatgcatgaggatatgaacccgcccaaaccc ccaatagatggcgcttcccgcatccgtaacgtcatcggcttggcagtcgattacccaaacaaacgtgtcttttttagtga cattcaacaaggcaatatacaagtggtggactttgatggaaagaacattcagcttgtagtaaaatcaatgatggagaagg agatggtagcgggggtatcaattttgtcagagatatcagctctgcaatacgcttag |
Protein
Protein ID | pfu_aug2.0_432.1_07513.t1 |
---|---|
Definition | - |
>pfu_aug2.0_432.1_07513.t1 MIFILVSPNEEACDYVGWFRCKDDGECIPEDWHCDGAEDCEDGSDEGINCINTETTRRRRSTYHTNLDKNLYIPCPPNYE RCPREQQCIPIAKFCDNSEDCPKGGDELKCNTNYTNNNCESLQCEYNCTKTKDGPRCYCPEGKRPNGTICSDFDECEYRD FFCNQLCSKPNDLSKPYMCECVDGYRLADDNKTCLANNVPKRDDATLLIADFDRLLYIHLNGKPYKPLINVIGEYITSVD YNHRNQTICWISFSRSSKRSEMRCRKVGDSSQIWTLETSFNLDTVSYMAQDWLTNNWYFVDSVYQRVILCNSMASMCRRV LKFDGESKPKAVALDPNEGALLDGSELQEIASDKIVSPSSIMIDYANKHLYWGDTGLNIIERIRYDGSERFINRHLPGYP AKEFGLSMMENYIYVTKDTTLFKMDRTNVSKPNIPINVSLHNPFQVLVYHRQRQPVITDISANCSALQCKHLCIPIQQNG TLVATCACRQGYIAEGNDCKIITDISANCSALQCKHLCIPIQQNGTLVATCACRQGYIAEGNDCKIHCSGNSTVSDPGTP IEDCQLNQECSDNYIRCPHAGCIPSLWYCDNGADCDDGFDEKQCSGRCDPIREFQCKSGGCISIDYRCDGIPNCDFVSAV HDLSDEEGCQNFCDAATEFDCNTTAPRCLPVIYRCDGEKDCSNGIDEENCGNHPVFKICEETTEFQCTDGTCIPSVWRCD GESDCDDGSDEQCHNISCKPSEFQCDTKRCIPSVWKCDKEHDCEDKSDEKNCDYDVLNCTYPNLWCGKCITPDKYCDRNK DCTDNSDETGCNNTLKNCTDLNLDKSQMCDTYCHLAPMALRSKYVCSCKAGFTLRDDNHTCQDTVPVYAIFSNRHEMRRV DLLSYNYAALVSGLHNTIALDFHYNKSNIYWTDVVDDKIYRGRMTSNSLIDVEPIVDVGLATTEGLAIDWIGNNLYWVES NLDQIEVASLDNVGMRTTLVAGNMYSPRAIVLDPRLGYNYLALVIIIEFTNVFCFLTDTVPVYAIFSNRHEMRRVDLLSY NYAALVSGLHNTIALDFHYNKSNIYWTDVVDDKIYRGRMTSNSLIDVEPIVDVGLATTEGLAIDWIGNNLYWVESNLDQI EVASLDNVGMRTTLVAGNMYSPRAIVLDPRLGMLFWTDWESDNPRIECSSMSGEERKANKFDGSNVTVIQQTITQPFDLQ VYHPKRQPNAVNPCKENNGGCSHLCLINFNQKAGCKCPHLWKLKKDGKTCERDMSFLLFGKNNEIRGVDLVNANYSVMPT ITLPHVNRPIAVDFDIGIAADASEEGRILWADEGLKVINSALINGSSVDTIIDSGIASLGGFAVDWLSKNMYFSSYDENA KKGSISVSKLNGAYRVEILMNPDVINPGAIALDPIKGNLYWCELGYALGQQKIMRAKMDGSGIETLYNMSSNPTSLNVDY ASGKVYWIEGFNKTIMVCNLINKNCSALQVDQNIKSPSAITVFMSKTLYVAHDKYLASMSQGGKNYTMLRDETTAVKYLR VYDISSRSGSNACSKQNGNCSQLCIPTGPNMRDCRCTAGYRRLNTVKCSGIEKFLIYTSDTEIRGLSFDSSDKSEALPLI SRIKKAGSVDFHADGDHIYWVDKTSSVEITRIKRDLTGRETIISEEESDVTSIAVDWIAGHLYWTDAQQKIIEVVKVDNP SVRYIILYTDLEYPTSVIVDPLKGKVYWIDSGRFPKIEMANLDGSGHKKLVENVTIENSDKQGWVGLAKDFNDNKLYWCD NIEEKLMVLDLEGSDRQAKMLLNLSDVSGRSPDDWDCQSVTVHDDFVYWIDLAIDTGVIRAVNKNTKSVTTGWTGLSPNM HSLRTFDSSIQTGSNPCKVNNGECKDLCFYDGKSVTCACSYGVLTEDGKGCTDHDSFLFYSKVTSIESLHMHEDMNPPKP PIDGASRIRNVIGLAVDYPNKRVFFSDIQQGNIQVVDFDGKNIQLVVKSMMEKEMVAGVSILSEISALQYA |