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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_432.1_07513
Locus scaffold432.1 : 234421 ... 292274 : -
To GenomeBrowser scaffold432.1:234421..292274
Genes list of scaffold scaffold432.1
Synonym pfu_aug1.0_44881.1_41335

Manual annotation
Annotation by Blast2GO
Annotation GO
low-density lipoprotein receptor-related protein 1-like GO:0005515 GO:0005886 GO:0006897 GO:0007166 GO:0008152 GO:0009968 GO:0016021 GO:0032370 GO:0032374 GO:0043231 GO:0044444 GO:0046872 GO:0048731 GO:0051128

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_432.1_07513.t1 8 1 Ldl_recept_a 13 50 0.0 203.7 2.0e-11 7.3e-08 32.1
pfu_aug2.0_432.1_07513.t1 8 2 Ldl_recept_a 75 110 0.0 203.7 3.5e-08 0.00013 21.7
pfu_aug2.0_432.1_07513.t1 10 1 FXa_inhibition 117 142 2.8e-25 88.1 0.15 570.0 0.7
pfu_aug2.0_432.1_07513.t1 9 1 cEGF 136 155 2.9e-06 26.7 0.012 45.0 3.8
pfu_aug2.0_432.1_07513.t1 10 2 FXa_inhibition 162 194 2.8e-25 88.1 9.0e-08 0.00034 20.6
pfu_aug2.0_432.1_07513.t1 9 2 cEGF 177 194 2.9e-06 26.7 9.0e-06 0.033 13.8
pfu_aug2.0_432.1_07513.t1 18 1 Ldl_recept_b 219 230 0.0 209.1 2.2 8200.0 -2.8
pfu_aug2.0_432.1_07513.t1 18 2 Ldl_recept_b 342 365 0.0 209.1 0.23 860.0 0.3
pfu_aug2.0_432.1_07513.t1 18 3 Ldl_recept_b 369 390 0.0 209.1 0.0067 25.0 5.2
pfu_aug2.0_432.1_07513.t1 10 3 FXa_inhibition 468 492 2.8e-25 88.1 5.3e-05 0.2 11.8
pfu_aug2.0_432.1_07513.t1 9 3 cEGF 485 499 2.9e-06 26.7 0.0002 0.76 9.4
pfu_aug2.0_432.1_07513.t1 10 4 FXa_inhibition 513 538 2.8e-25 88.1 0.0002 0.76 9.9
pfu_aug2.0_432.1_07513.t1 9 4 cEGF 530 544 2.9e-06 26.7 0.0002 0.76 9.4
pfu_aug2.0_432.1_07513.t1 8 3 Ldl_recept_a 569 604 0.0 203.7 3.3e-11 1.2e-07 31.4
pfu_aug2.0_432.1_07513.t1 10 5 FXa_inhibition 570 595 2.8e-25 88.1 4.0 15000.0 -5.2
pfu_aug2.0_432.1_07513.t1 8 4 Ldl_recept_a 607 649 0.0 203.7 1.1e-10 4.0e-07 29.8
pfu_aug2.0_432.1_07513.t1 10 6 FXa_inhibition 645 655 2.8e-25 88.1 0.7 2600.0 -1.4
pfu_aug2.0_432.1_07513.t1 8 5 Ldl_recept_a 653 690 0.0 203.7 7.5e-10 2.8e-06 27.1
pfu_aug2.0_432.1_07513.t1 8 6 Ldl_recept_a 699 732 0.0 203.7 1.1e-13 4.2e-10 39.3
pfu_aug2.0_432.1_07513.t1 8 7 Ldl_recept_a 738 772 0.0 203.7 6.1e-16 2.3e-12 46.6
pfu_aug2.0_432.1_07513.t1 8 8 Ldl_recept_a 787 811 0.0 203.7 6.1e-07 0.0023 17.8
pfu_aug2.0_432.1_07513.t1 9 5 cEGF 816 820 2.9e-06 26.7 1.6 6000.0 -3.0
pfu_aug2.0_432.1_07513.t1 10 7 FXa_inhibition 828 861 2.8e-25 88.1 1.2e-06 0.0045 17.0
pfu_aug2.0_432.1_07513.t1 9 6 cEGF 844 863 2.9e-06 26.7 2.4e-08 8.9e-05 22.0
pfu_aug2.0_432.1_07513.t1 18 4 Ldl_recept_b 908 950 0.0 209.1 4.8e-06 0.018 15.3
pfu_aug2.0_432.1_07513.t1 18 5 Ldl_recept_b 953 994 0.0 209.1 1.2e-10 4.4e-07 30.1
pfu_aug2.0_432.1_07513.t1 18 6 Ldl_recept_b 1063 1105 0.0 209.1 4.8e-06 0.018 15.3
pfu_aug2.0_432.1_07513.t1 18 7 Ldl_recept_b 1108 1149 0.0 209.1 1.2e-10 4.4e-07 30.1
pfu_aug2.0_432.1_07513.t1 18 8 Ldl_recept_b 1153 1177 0.0 209.1 3.6e-06 0.013 15.7
pfu_aug2.0_432.1_07513.t1 10 8 FXa_inhibition 1214 1250 2.8e-25 88.1 2.1e-13 7.7e-10 38.7
pfu_aug2.0_432.1_07513.t1 9 7 cEGF 1246 1251 2.9e-06 26.7 2.8 11000.0 -3.8
pfu_aug2.0_432.1_07513.t1 18 9 Ldl_recept_b 1306 1346 0.0 209.1 1.1e-05 0.041 14.2
pfu_aug2.0_432.1_07513.t1 18 10 Ldl_recept_b 1361 1394 0.0 209.1 7.5e-05 0.28 11.5
pfu_aug2.0_432.1_07513.t1 18 11 Ldl_recept_b 1397 1424 0.0 209.1 0.015 54.0 4.2
pfu_aug2.0_432.1_07513.t1 18 12 Ldl_recept_b 1443 1483 0.0 209.1 0.00049 1.8 8.9
pfu_aug2.0_432.1_07513.t1 10 9 FXa_inhibition 1533 1561 2.8e-25 88.1 1.2e-08 4.3e-05 23.5
pfu_aug2.0_432.1_07513.t1 9 8 cEGF 1554 1564 2.9e-06 26.7 0.0096 36.0 4.1
pfu_aug2.0_432.1_07513.t1 18 13 Ldl_recept_b 1617 1657 0.0 209.1 0.054 200.0 2.3
pfu_aug2.0_432.1_07513.t1 18 14 Ldl_recept_b 1660 1701 0.0 209.1 3.9e-08 0.00014 22.0
pfu_aug2.0_432.1_07513.t1 18 15 Ldl_recept_b 1704 1730 0.0 209.1 9.8e-07 0.0036 17.5
pfu_aug2.0_432.1_07513.t1 18 16 Ldl_recept_b 1754 1784 0.0 209.1 2.4e-05 0.089 13.1
pfu_aug2.0_432.1_07513.t1 18 17 Ldl_recept_b 1806 1813 0.0 209.1 0.25 910.0 0.2
pfu_aug2.0_432.1_07513.t1 10 10 FXa_inhibition 1857 1891 2.8e-25 88.1 4.5e-09 1.7e-05 24.8
pfu_aug2.0_432.1_07513.t1 9 9 cEGF 1875 1895 2.9e-06 26.7 0.2 750.0 -0.2
pfu_aug2.0_432.1_07513.t1 18 18 Ldl_recept_b 1942 1964 0.0 209.1 0.0031 11.0 6.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_432.1_07513.t1 gi|74181737|dbj|BAE32580.1| unnamed protein product [Mus musculus] 0.0
pfu_aug2.0_432.1_07513.t1 gi|512832233|ref|XP_004882397.1| 0.0
pfu_aug2.0_432.1_07513.t1 gi|528493286|ref|XP_002663730.3| PREDICTED: low-density lipoprotein receptor-related protein 1-like [Danio rerio] 0.0
pfu_aug2.0_432.1_07513.t1 gi|723122920|ref|XP_010290280.1| PREDICTED: low-density lipoprotein receptor-related protein 1B, partial [Phaethon lepturus] 0.0

Transcript
Transcript IDpfu_aug2.0_432.1_07513.t1
Definition-
>pfu_aug2.0_432.1_07513.t1
atgatatttattttagtgtcaccaaacgaagaagcatgtgattatgttggttggttccgttgtaaagatgatggagagtg
catccctgaagattggcattgtgatggtgcggaagactgtgaagatgggtctgatgagggaataaattgtataaacactg
agactacaaggagaagaagatctacatatcatacaaatttagataagaatttatatatcccgtgtccaccgaactacgag
aggtgcccacgagaacaacaatgcattccaatagcaaaattctgtgataatagtgaggactgccccaaaggtggtgacga
attaaaatgcaatacaaattacacaaataacaattgtgaaagcttacagtgtgagtacaactgcactaaaaccaaagatg
ggccacggtgctactgccctgagggcaagaggcccaatgggactatctgctcagattttgatgagtgtgaatacagagat
tttttctgcaaccaattatgcagcaagcctaatgatctcagtaaaccttacatgtgtgaatgtgtagatgggtatagact
agctgatgacaataaaacgtgcctagccaataatgtgccaaaacgtgacgatgcaactttacttattgcggattttgacc
gtttactttatatacatctgaatgggaagccgtataagccactgattaatgttataggagaatatataacatctgtagac
tacaaccatagaaatcaaaccatatgctggatatcctttagtcgcagcagtaaacgttcggagatgagatgtcggaaagt
tggagacagttcacagatatggacgttggaaacctcattcaatcttgacactgtaagctacatggcccaggattggctta
caaacaattggtattttgtggacagcgtataccagagggtcatcctatgtaattcgatggcgtctatgtgtcgcagggtc
ctcaagtttgacggagagagtaaacccaaggcagtggctctggatccaaatgaaggagctttattagacggttcagaatt
gcaggaaatcgcaagcgacaaaatcgtgtcaccgtcttctattatgatagattacgccaacaaacacttgtactggggag
acacggggcttaacatcattgagagaataagatacgatggctcggaaagatttatcaatagacacttacctggttatcca
gcgaaggagtttggtctgtccatgatggagaattatatctacgttactaaggacacgaccttgtttaagatggaccgcac
caatgtcagcaaacccaacattccaatcaacgtgtcacttcataatccattccaggtacttgtgtaccatcgccaacggc
aaccagttatcacagacatatcagcaaactgttcggcactacagtgtaaacatttatgcattccaatacaacaaaacgga
actctagtagcgacttgcgcctgtcgtcaggggtatatagcggaaggcaatgactgtaaaattatcacagacatatcagc
aaactgttcggcactacagtgtaaacatttatgcattccaatacaacagaacggaactctagtagccacttgtgcctgtc
gtcaggggtatatagcggaaggcaatgactgtaaaattcactgctcaggcaatagtacagtcagtgatccaggcacaccc
atagaagactgccaactcaaccaagagtgttcagataattacatacgttgcccacacgcgggatgcattcctagtctatg
gtactgtgataatggggcagactgtgatgatggctttgatgaaaaacaatgttccggccgctgtgatccaatcagagaat
tccagtgtaagagcggaggttgtatatctatagactatagatgtgacggaatcccgaactgtgattttgtcagtgccgtg
catgatctctcagatgaggagggttgtcagaatttctgtgacgcggctacggagtttgactgtaacaccaccgcccctcg
ctgtctgccagttatttatagatgtgatggtgaaaaagactgctcaaacggaattgacgaggaaaattgtggtaatcatc
cagtcttcaagatctgtgaggagacaacagaattccagtgtacagacgggacatgtataccaagcgtttggcgatgtgac
ggagaaagtgattgtgacgacgggtcagacgaacaatgccataacataagttgtaagccaagtgagtttcagtgcgatac
aaagcgttgtataccgtcagtatggaaatgtgataaagaacacgactgtgaagataaatcggatgaaaaaaattgcgatt
atgacgttttgaattgcacatatccaaacttgtggtgtggaaagtgtattacaccagacaaatactgtgacaggaataaa
gactgtacagataattctgatgaaacggggtgcaacaacacactaaagaattgtactgatttgaatctcgataaatccca
aatgtgtgacacgtactgccacttggcccctatggcactacgatccaagtatgtgtgctcatgtaaagctggctttactc
tgagagacgataatcacacttgtcaagatacagtccctgtttatgctattttctccaacagacacgagatgcgacgagtc
gacttgttgagctataattacgcagccctagtatcaggattacataacacgatagcgttagatttccattataataagag
taacatttattggacggatgtcgttgatgataaaatataccgaggaaggatgacgtcaaacagtctgatagatgttgagc
caatcgtagatgttggtttagccacgaccgaaggacttgccatcgattggataggtaacaatctgtactgggtcgagagc
aatctagatcaaatcgaagtcgcaagtctggacaatgtgggaatgaggacgaccctcgtagctggaaatatgtacagtcc
tagagccatagtactggatcctagattgggctataactacttagcactagtaataataatagaatttacaaacgtatttt
gtttccttacagataccgtccctgtgtatgctattttctccaacagacacgagatgcgacgagtcgacttgttgagctat
aattacgcagctctggtatcaggattacataacacgatagcgttagatttccattataataagagtaacatttattggac
ggatgttgttgacgataaaatatacagaggaaggatgacgtcaaacagtctgattgatgttgagccaatcgtagatgttg
gtttagccacgaccgaaggacttgccatcgattggataggtaacaatctgtactgggtcgagagcaatctagatcaaatc
gaagtcgcaagtctggacaatgtgggaatgaggacaaccctcgtagctggaaatatgtacagtcctagagccatagtact
ggatcctagattggggatgttgttttggacagactgggagtcggacaatccgaggattgagtgtagttctatgtcgggag
aggagaggaaggcaaacaagtttgatggctccaatgtaacagtcattcagcaaaccatcacacaaccgtttgatctacaa
gtgtaccatccaaaacggcaaccaaacgccgttaatccgtgtaaggagaataatggaggatgctcgcatctgtgtctgat
caattttaatcagaaagcgggctgtaaatgtcctcatctatggaaactgaaaaaagacggaaaaacgtgtgagagagaca
tgagttttctattgttcggcaaaaataacgaaatccgtggagtggaccttgtcaacgcaaactacagtgtcatgccgacc
attacattaccgcatgtaaaccgaccaatcgctgtggactttgatattggcattgcggcagatgcatcagaggaaggtcg
gatattgtgggcggacgaggggttaaaggtcatcaacagtgcacttatcaacggatcttctgtagatacaataattgact
cgggaattgccagtcttggtggatttgctgttgattggttgtccaaaaatatgtatttttcatcatacgacgagaacgct
aagaagggaagcatttctgtttcaaagctgaacggagcgtacagagtggaaattctaatgaacccagacgtgataaatcc
tggagcaatagcactggatccaattaagggtaacttgtattggtgtgagcttggatatgcattgggacagcagaaaatca
tgagggcaaaaatggacggttcgggaatcgagaccctatacaatatgtcatctaatcctaccagtttaaatgtggattat
gccagcggcaaagtctattggatagaaggcttcaataaaacaatcatggtctgcaatcttatcaacaaaaattgttctgc
cttgcaagtggatcaaaacattaaaagtccatccgcaataaccgtatttatgtcaaagacgctatacgtggcacatgaca
aataccttgcaagcatgagccagggcggaaaaaattacaccatgttgcgagatgaaacgacggcagtcaaatatttacgt
gtgtatgacatcagcagtagatcaggttccaatgcatgctcaaagcagaacggaaattgctctcagctgtgtattcccac
aggaccaaacatgcgggattgtcgatgtacggcaggatatcgtcgtttaaacaccgtaaaatgctcaggcatagagaaat
tcctgatatacacaagtgacacagagattcgaggtttgtcgtttgattcgtcagacaaatctgaagctctaccgctcata
tcacggatcaagaaagccggctctgtggatttccatgcagatggtgatcatatttattgggttgacaagacttcttctgt
tgaaattactcggattaaacgggatctgacaggacgagaaacaatcatttccgaggaggaaagtgacgtaacttctattg
ctgtagactggatcgcaggacacctttactggactgacgctcaacagaaaatcatagaagtcgtcaaagtagacaatcca
tctgtacgctatatcatactatacactgacctggaatatcctacctctgtcatagtagacccattgaaaggaaaagttta
ttggattgactccgggagatttccaaaaatagaaatggccaatctagacgggtcaggtcataaaaaactcgtagaaaatg
tgacgattgagaactcagacaaacagggttgggttggattggcaaaggacttcaacgataataaactgtactggtgcgac
aacatcgaagaaaagttgatggtgcttgatttagaggggtcagatcggcaggctaagatgcttctgaatttgagtgacgt
aagtgggcggagccccgatgattgggactgccagtctgtcactgtacatgatgattttgtctactggattgacttggcta
ttgacactggtgttataagagcagtcaacaaaaatacaaagtcggtgaccacaggatggacggggttatctcctaacatg
catagcctccggacctttgatagcagcatacaaacaggctcaaatccttgcaaagtaaacaatggtgaatgtaaagatct
gtgcttttatgacggaaaaagtgtgacttgtgcatgttcctacggggtattgactgaggacggcaaaggttgcacagatc
acgacagtttcctgttctactccaaggtgacttccatagaaagcttacacatgcatgaggatatgaacccgcccaaaccc
ccaatagatggcgcttcccgcatccgtaacgtcatcggcttggcagtcgattacccaaacaaacgtgtcttttttagtga
cattcaacaaggcaatatacaagtggtggactttgatggaaagaacattcagcttgtagtaaaatcaatgatggagaagg
agatggtagcgggggtatcaattttgtcagagatatcagctctgcaatacgcttag

Protein
Protein IDpfu_aug2.0_432.1_07513.t1
Definition-
>pfu_aug2.0_432.1_07513.t1
MIFILVSPNEEACDYVGWFRCKDDGECIPEDWHCDGAEDCEDGSDEGINCINTETTRRRRSTYHTNLDKNLYIPCPPNYE
RCPREQQCIPIAKFCDNSEDCPKGGDELKCNTNYTNNNCESLQCEYNCTKTKDGPRCYCPEGKRPNGTICSDFDECEYRD
FFCNQLCSKPNDLSKPYMCECVDGYRLADDNKTCLANNVPKRDDATLLIADFDRLLYIHLNGKPYKPLINVIGEYITSVD
YNHRNQTICWISFSRSSKRSEMRCRKVGDSSQIWTLETSFNLDTVSYMAQDWLTNNWYFVDSVYQRVILCNSMASMCRRV
LKFDGESKPKAVALDPNEGALLDGSELQEIASDKIVSPSSIMIDYANKHLYWGDTGLNIIERIRYDGSERFINRHLPGYP
AKEFGLSMMENYIYVTKDTTLFKMDRTNVSKPNIPINVSLHNPFQVLVYHRQRQPVITDISANCSALQCKHLCIPIQQNG
TLVATCACRQGYIAEGNDCKIITDISANCSALQCKHLCIPIQQNGTLVATCACRQGYIAEGNDCKIHCSGNSTVSDPGTP
IEDCQLNQECSDNYIRCPHAGCIPSLWYCDNGADCDDGFDEKQCSGRCDPIREFQCKSGGCISIDYRCDGIPNCDFVSAV
HDLSDEEGCQNFCDAATEFDCNTTAPRCLPVIYRCDGEKDCSNGIDEENCGNHPVFKICEETTEFQCTDGTCIPSVWRCD
GESDCDDGSDEQCHNISCKPSEFQCDTKRCIPSVWKCDKEHDCEDKSDEKNCDYDVLNCTYPNLWCGKCITPDKYCDRNK
DCTDNSDETGCNNTLKNCTDLNLDKSQMCDTYCHLAPMALRSKYVCSCKAGFTLRDDNHTCQDTVPVYAIFSNRHEMRRV
DLLSYNYAALVSGLHNTIALDFHYNKSNIYWTDVVDDKIYRGRMTSNSLIDVEPIVDVGLATTEGLAIDWIGNNLYWVES
NLDQIEVASLDNVGMRTTLVAGNMYSPRAIVLDPRLGYNYLALVIIIEFTNVFCFLTDTVPVYAIFSNRHEMRRVDLLSY
NYAALVSGLHNTIALDFHYNKSNIYWTDVVDDKIYRGRMTSNSLIDVEPIVDVGLATTEGLAIDWIGNNLYWVESNLDQI
EVASLDNVGMRTTLVAGNMYSPRAIVLDPRLGMLFWTDWESDNPRIECSSMSGEERKANKFDGSNVTVIQQTITQPFDLQ
VYHPKRQPNAVNPCKENNGGCSHLCLINFNQKAGCKCPHLWKLKKDGKTCERDMSFLLFGKNNEIRGVDLVNANYSVMPT
ITLPHVNRPIAVDFDIGIAADASEEGRILWADEGLKVINSALINGSSVDTIIDSGIASLGGFAVDWLSKNMYFSSYDENA
KKGSISVSKLNGAYRVEILMNPDVINPGAIALDPIKGNLYWCELGYALGQQKIMRAKMDGSGIETLYNMSSNPTSLNVDY
ASGKVYWIEGFNKTIMVCNLINKNCSALQVDQNIKSPSAITVFMSKTLYVAHDKYLASMSQGGKNYTMLRDETTAVKYLR
VYDISSRSGSNACSKQNGNCSQLCIPTGPNMRDCRCTAGYRRLNTVKCSGIEKFLIYTSDTEIRGLSFDSSDKSEALPLI
SRIKKAGSVDFHADGDHIYWVDKTSSVEITRIKRDLTGRETIISEEESDVTSIAVDWIAGHLYWTDAQQKIIEVVKVDNP
SVRYIILYTDLEYPTSVIVDPLKGKVYWIDSGRFPKIEMANLDGSGHKKLVENVTIENSDKQGWVGLAKDFNDNKLYWCD
NIEEKLMVLDLEGSDRQAKMLLNLSDVSGRSPDDWDCQSVTVHDDFVYWIDLAIDTGVIRAVNKNTKSVTTGWTGLSPNM
HSLRTFDSSIQTGSNPCKVNNGECKDLCFYDGKSVTCACSYGVLTEDGKGCTDHDSFLFYSKVTSIESLHMHEDMNPPKP
PIDGASRIRNVIGLAVDYPNKRVFFSDIQQGNIQVVDFDGKNIQLVVKSMMEKEMVAGVSILSEISALQYA

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Okinawa Institute of Science and Technology
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