Gene
| Gene Model ID | pfu_aug2.0_432.1_07514 |
|---|---|
| Locus | scaffold432.1 : 294344 ... 295294 : - |
| To GenomeBrowser | scaffold432.1:294344..295294 |
| Genes list of scaffold | scaffold432.1 |
| Synonym | pfu_aug1.0_8084.1_53095 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_432.1_07514.t1 | 2 | 1 | DAP_epimerase | 6 | 67 | 1.2e-24 | 86.5 | 5.0e-15 | 7.4e-11 | 42.0 |
| pfu_aug2.0_432.1_07514.t1 | 2 | 2 | DAP_epimerase | 113 | 236 | 1.2e-24 | 86.5 | 2.6e-15 | 3.9e-11 | 42.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_432.1_07514.t1 | gi|150025283|ref|YP_001296109.1| | 0.0 | |
| pfu_aug2.0_432.1_07514.t1 | gi|489070393|ref|WP_002980364.1| | diaminopimelate epimerase [Chryseobacterium gleum] | 1.4013e-45 |
| pfu_aug2.0_432.1_07514.t1 | gi|340616019|ref|YP_004734472.1| | 4.06377e-44 | |
| pfu_aug2.0_432.1_07514.t1 | gi|21674831|ref|NP_662896.1| | 3.9937e-43 | |
| pfu_aug2.0_432.1_07514.t1 | gi|639234481|ref|WP_024565476.1| | diaminopimelate epimerase [Elizabethkingia anophelis] | 8.00141e-43 |
Transcript
| Transcript ID | pfu_aug2.0_432.1_07514.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_432.1_07514.t1 atgcacatgctttatgaggacaacatccggttcctgtgtcatcgacgacttggaatcggtgccgacggtttgatagaaat caacgaatcgtcgactgttgattacgacttcggtttcgactattacaattcggatggtcgaataggaagtctttgtggaa atggatgtcgatgcgcattgcaatttgcgtcgaatctgggtatgatacgaaagttcgaatgggttaaatttcatgtaaac gactgtatatacagcggggtggtcgtagaagactgtatgcgcatgaagtttgaaaatgtgaaaaaatgtgacgttattca gagagattcgcaatcattctttctggatacaggttcgccgcacgtggtgaattttgttccagataattcaacggtgaacg ttttcgaagagggtcgaaaaattcgatacagttctgaatatgaaacaaagggtgtcaatgttaactatgtcagcctagag tcggatattttatgtgttcgcacgtacgaaagaggtgttgaggaagagacctttgcttgcgggacaggtgcagtagcttc cgctttagcatatcatcgcatgactaatactacttccgcttcctgtgaaagccattcaactgtcattaagttccgatttg gaaaactgaaagtcatattcgtcagctcggaggatatatattctgatattgtattagagggcccagccaaacatgtgttc gatggcgaaatagcttttgataagaagtag |
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Protein
| Protein ID | pfu_aug2.0_432.1_07514.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_432.1_07514.t1 MHMLYEDNIRFLCHRRLGIGADGLIEINESSTVDYDFGFDYYNSDGRIGSLCGNGCRCALQFASNLGMIRKFEWVKFHVN DCIYSGVVVEDCMRMKFENVKKCDVIQRDSQSFFLDTGSPHVVNFVPDNSTVNVFEEGRKIRYSSEYETKGVNVNYVSLE SDILCVRTYERGVEEETFACGTGAVASALAYHRMTNTTSASCESHSTVIKFRFGKLKVIFVSSEDIYSDIVLEGPAKHVF DGEIAFDKK |
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