Gene
| Gene Model ID | pfu_aug2.0_4337.1_25924 |
|---|---|
| Locus | scaffold4337.1 : 1 ... 8965 : - |
| To GenomeBrowser | scaffold4337.1:1..8965 |
| Genes list of scaffold | scaffold4337.1 |
| Synonym | pfu_aug1.0_20823.1_18747 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| large proline-rich protein bag6 isoform x1 | GO:0005515 GO:0006915 GO:0007275 GO:0044267 GO:0044424 GO:0048856 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4337.1_25924.t1 | 1 | 1 | Rad60-SLD | 1 | 69 | 3.1e-08 | 33.1 | 2.6e-11 | 6.3e-08 | 32.1 |
| pfu_aug2.0_4337.1_25924.t1 | 2 | 1 | Rad60-SLD_2 | 3 | 90 | 5.1e-07 | 29.5 | 2.3e-10 | 5.6e-07 | 29.4 |
| pfu_aug2.0_4337.1_25924.t1 | 1 | 1 | ubiquitin | 6 | 73 | 7.2e-16 | 57.3 | 5.5e-19 | 1.3e-15 | 56.4 |
| pfu_aug2.0_4337.1_25924.t1 | 3 | 1 | DUF3538 | 157 | 180 | 2.7e-23 | 81.8 | 1.7 | 4100.0 | -2.7 |
| pfu_aug2.0_4337.1_25924.t1 | 2 | 2 | Rad60-SLD_2 | 189 | 195 | 5.1e-07 | 29.5 | 1.3 | 3100.0 | -2.0 |
| pfu_aug2.0_4337.1_25924.t1 | 3 | 2 | DUF3538 | 200 | 200 | 2.7e-23 | 81.8 | 2.6 | 6400.0 | -3.3 |
| pfu_aug2.0_4337.1_25924.t1 | 3 | 3 | DUF3538 | 262 | 356 | 2.7e-23 | 81.8 | 1.1e-26 | 2.7e-23 | 81.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4337.1_25924.t1 | gi|260799818|ref|XP_002594881.1| | hypothetical protein BRAFLDRAFT_124456 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_4337.1_25924.t1 | gi|676491234|ref|XP_009065529.1| | hypothetical protein LOTGIDRAFT_236418 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_4337.1_25924.t1 | gi|557017237|ref|XP_006009030.1| | PREDICTED: large proline-rich protein BAG6-like [Latimeria chalumnae] | 2.00386e-43 |
Transcript
| Transcript ID | pfu_aug2.0_4337.1_25924.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4337.1_25924.t1 atgaatgtaacagtgaaaactctggatgggcagaacaggacttacaatgatttaccagaaaatacaaccatacgagaatt caaggagaaaattgcaggagatataaacataacagcagacacacaaagactgatatttcaagggagagtactccaagatg ataaaaccctcaaagactgtgatgtaaatggtaaagtggtacatgtggtgcaccgcccaccaccatctagccgtccacag ggtgccacatccacctctaactccaccacaaactctgcaggtggtgctccacacgcacacaacttgtttggtccttttgt actacctactgatgtgggaccgaatgaagttcagaacatcatacaagatgctgtccaaggtatgggagatctgggaagaa atgctcgtgtttcaactcgagcctcgaatgacggatcatcatgggatgtgcatatccacttgggtcagaataacacagcc ccgcaggagagcgaatctcagatgagaatgaaccaagcacgtagaatgctcaggatcgccagacagaacctgaatagatt agagaatccaaatgcaaatagacaagacaatgcagaggaagatgaaatggaaacggacaatgagagggcagcaccgcaac aacaaagagagcaagatagccaatcacaagcctcctctcaaacggagggtaggagtgaacctcaagcaggaagtcaacca aatggagccaatgccaattcaacgcgcacaccttcaggacttattcgtcctcgtatatcggcacttggagaaatgttaaa tgagcttcatgatgtgaaccgaagatttcagccgttcttagaaagatttcagcagcttctgatagacgatccagaattgt ctgaaacggagttacagtccaatcagcagatgtgtaacttggtttccgagacgatgcacgccattagtcacgcctaccat tcaatcagtgacctaatgatagatctgagccaggatcggccaagatttctgtttgctgcgtttatgtcccctccaatcag ccacacagctgttatacagcaaacaatacctgtacatgtcaatgca |
|
Protein
| Protein ID | pfu_aug2.0_4337.1_25924.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4337.1_25924.t1 MNVTVKTLDGQNRTYNDLPENTTIREFKEKIAGDINITADTQRLIFQGRVLQDDKTLKDCDVNGKVVHVVHRPPPSSRPQ GATSTSNSTTNSAGGAPHAHNLFGPFVLPTDVGPNEVQNIIQDAVQGMGDLGRNARVSTRASNDGSSWDVHIHLGQNNTA PQESESQMRMNQARRMLRIARQNLNRLENPNANRQDNAEEDEMETDNERAAPQQQREQDSQSQASSQTEGRSEPQAGSQP NGANANSTRTPSGLIRPRISALGEMLNELHDVNRRFQPFLERFQQLLIDDPELSETELQSNQQMCNLVSETMHAISHAYH SISDLMIDLSQDRPRFLFAAFMSPPISHTAVIQQTIPVHVNA |
|