Gene
| Gene Model ID | pfu_aug2.0_4378.1_29288 |
|---|---|
| Locus | scaffold4378.1 : 2557 ... 13835 : - |
| To GenomeBrowser | scaffold4378.1:2557..13835 |
| Genes list of scaffold | scaffold4378.1 |
| Synonym | pfu_aug1.0_88481.1_42216 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4378.1_29288.t1 | 2 | 1 | HLH | 70 | 86 | 1.8e-16 | 59.5 | 0.85 | 3200.0 | -2.1 |
| pfu_aug2.0_4378.1_29288.t1 | 2 | 2 | HLH | 92 | 143 | 1.8e-16 | 59.5 | 4.9e-20 | 1.8e-16 | 59.5 |
| pfu_aug2.0_4378.1_29288.t1 | 2 | 1 | Neuro_bHLH | 150 | 224 | 1.8e-18 | 67.4 | 4.9e-22 | 1.8e-18 | 67.4 |
| pfu_aug2.0_4378.1_29288.t1 | 2 | 2 | Neuro_bHLH | 235 | 300 | 1.8e-18 | 67.4 | 0.093 | 350.0 | 2.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4378.1_29288.t1 | gi|524865903|ref|XP_005089777.1| | PREDICTED: uncharacterized protein LOC101854217 [Aplysia californica] | 0.0 |
| pfu_aug2.0_4378.1_29288.t1 | gi|291242315|ref|XP_002741053.1| | PREDICTED: neurogenic differentiation factor 1-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_4378.1_29288.t1 | gi|676436015|ref|XP_009047744.1| | hypothetical protein LOTGIDRAFT_59712, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_4378.1_29288.t1 | gi|42542495|gb|AAH66437.1| | Neurod protein [Danio rerio] | 0.0 |
| pfu_aug2.0_4378.1_29288.t1 | gi|148222631|ref|NP_001079263.1| | neurogenic differentiation factor 1 [Xenopus laevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4378.1_29288.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4378.1_29288.t1 atgccaataaaaatgcaggaaaattccgaagcggaacaggatttgagttttaccggaagtgaccttgacgatattgacct tgatgatgacatctccgagttgattgaaagtgatgacgaggattccgaagttaactccccggatgagaacaaaaatcaaa agagcagtacgggaaggaagagaaaagacaaacaggaagaacccaaagttccgaaaaagagaggtccaaaaaagaagcga atgaccaaagctagaatagccaaattacgacttcggagggtaaaagcgaacgcaagggaacgaaacagaatgcacgggct aaatgatgctttagatatcttgcgaaaacacgtgccttgttattctaaaacacaaaaactgtccaaaattgaaacactcc gtcttgcccgcaattacatcagtgccttatcggacattctagagtctggagtcaaaccggattcggtcacgtttgcaaaa gctttgtcgaagggactttctcaaaatacaatgaacttagtggctggcggtctacagttaaaccccagaactctactacc ggaatctacatatgccaaacaatatcaattctattacaataacactttcgaggtgtctaagccaaaccaaaatgtgtctt atcataatgtttattcgttgccttcccctcaagttgcgtacagccattctccaatcaacaacggcgtatctccggtggct agaataccgtactcacattctagtccggtttcctgtggactgccatcgtgtacttccgtatctcaagccaatttcggtaa cgtcagagacacaagtccattgcaggctgcaactgcgtcatcttcaatccaatgcgaggctgtgacgtcatcaaattata tgcaatatgacaacaacatggagaggtacatggacccacgatcgcagcaaaccgtacagttttttccacagcagtcggtg cccgttcctcacgactgtagtccgtacatcttgttagacgacctagcagacttttctccagacactaccatagatactga tatgtctattattagcagcggatcgtcaatttttgatgtcacaggataa |
|
Protein
| Protein ID | pfu_aug2.0_4378.1_29288.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4378.1_29288.t1 MPIKMQENSEAEQDLSFTGSDLDDIDLDDDISELIESDDEDSEVNSPDENKNQKSSTGRKRKDKQEEPKVPKKRGPKKKR MTKARIAKLRLRRVKANARERNRMHGLNDALDILRKHVPCYSKTQKLSKIETLRLARNYISALSDILESGVKPDSVTFAK ALSKGLSQNTMNLVAGGLQLNPRTLLPESTYAKQYQFYYNNTFEVSKPNQNVSYHNVYSLPSPQVAYSHSPINNGVSPVA RIPYSHSSPVSCGLPSCTSVSQANFGNVRDTSPLQAATASSSIQCEAVTSSNYMQYDNNMERYMDPRSQQTVQFFPQQSV PVPHDCSPYILLDDLADFSPDTTIDTDMSIISSGSSIFDVTG |
|