Gene
| Gene Model ID | pfu_aug2.0_438.1_27392 |
|---|---|
| Locus | scaffold438.1 : 10696 ... 38650 : + |
| To GenomeBrowser | scaffold438.1:10696..38650 |
| Genes list of scaffold | scaffold438.1 |
| Synonym | pfu_aug1.0_75366.1_05887 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_438.1_27392.t1 | 5 | 1 | zf-B_box | 344 | 373 | 2.6e-07 | 30.4 | 0.0007 | 2.1 | 8.3 |
| pfu_aug2.0_438.1_27392.t1 | 5 | 2 | zf-B_box | 391 | 427 | 2.6e-07 | 30.4 | 8.6e-11 | 2.6e-07 | 30.4 |
| pfu_aug2.0_438.1_27392.t1 | 5 | 3 | zf-B_box | 606 | 622 | 2.6e-07 | 30.4 | 0.073 | 220.0 | 1.8 |
| pfu_aug2.0_438.1_27392.t1 | 5 | 4 | zf-B_box | 629 | 641 | 2.6e-07 | 30.4 | 0.21 | 620.0 | 0.3 |
| pfu_aug2.0_438.1_27392.t1 | 5 | 5 | zf-B_box | 636 | 659 | 2.6e-07 | 30.4 | 5.0 | 15000.0 | -5.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_438.1_27392.t1 | gi|585705476|ref|XP_006898518.1| | PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X4 [Elephantulus edwardii] | 8.0e-14 |
| pfu_aug2.0_438.1_27392.t1 | gi|585705472|ref|XP_006898517.1| | PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X3 [Elephantulus edwardii] | 1.0e-13 |
| pfu_aug2.0_438.1_27392.t1 | gi|554523585|ref|XP_005856685.1| | PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X3 [Myotis brandtii] | 2.0e-13 |
| pfu_aug2.0_438.1_27392.t1 | gi|554523583|ref|XP_005856688.1| | PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X6 [Myotis brandtii] | 2.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_438.1_27392.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_438.1_27392.t1 atggtgaattctatttgccagctgccatgggacatgtatgtgcaaagaacaccctacctcaactgtaggagaatatataa ttgtggaccagatgttgttgcgatacggagtggacacaacagtgaagcatgttacgctgccaagttttgtcgatgtgatt atacaaactgtttttatggcagcaatgcatgtgtgtgtagaaaacaatggactgcatgtggagttaatcataccctaaat agtgatggaaagtgtgtgccatgcccggatggattttacaagcctaataatggatgccattcgtgttacaaaattgatcc atacaaagcttcttataatactccaccgacaaccacaaagaggcctattcccaggacttctactaccagtccgacttcta ctgcaagtccaagattagctagcaacagatcacaaggatcaagttacgatacatcatcccagtcaaacgttgttgtcata acggataaagcttccagcgtcggtgtgacggtctcctcggcgagaaaaagtttatctcaaagagagtcatcaaccacaga ggcggagtccaaccctactgtcccaatagtggtcgttacaataccacagacagatcatggatccggaaaaccaagtcttg aatctcagagctccggcatttcctctcagtcagcgacaatatcagaatctgtatctacacctgtactcgaaacaggaacc agtccagctgcacatcctctcgaaatatataggtcaattagtagtgaaactagtccttttctgactgaaataattttatc acacatgagcaaatctacggacgatgtaagcttaaatgctgacccacagcaacaagacagtaatgtaatgtgtaataatg atgaaagttcgacaactccggcaccaaactccatcagctcttcatgtccctctcctatcgtctcagactcaatacaaact gttgacaccaacgatcatagaatctctattgtaggattagaaatgtgcagctttgaatcggacgaaagtgaggcttgtga gtattgctgtgaatgtgcacaatatttatgtgaaacgtgtgcaaaacaacacacgaagataaagaagttcaagcatcatc actacatcagagcgaccgtagcttgcctatctggattagataaagcaattacgacttgtcctaaacacgatggacaggag ttgaaatatcattgcgaagatgatggtcatagcatgtgtggagaatgcaaggacgcacatgttggacatcattttattga aatccaagacaaatgcaacgatttgatgaaaagtataggaaaacgacttagcgtaccagtacctaaagatgggattcgaa aaacgaaagtagaatttactaaacgaattgaaaacttgtcctaccttgtgaaggaaagaaatgagtttctgaaaacgaag ttagatgatatggagtatagactccaagaagagttaaagaaatacaatggaagcattgctcaatttttcgatgaaaagat cgaaaaggcagaggaaaaagaaagaataagaaaaacatttgagcaagatgtttcgatcagagagggggcatctctttatc agtaccttatagatttagataaaagatttggcaagatgtctgatgcaaaatcaaagcctgggattcctaccttgatcgat acctctattgatgtccagacagacgggcaaaaatatttggcggcccttcagatgtacatcaatggcccactcaaaggtga ctcagaggacggatgcgaacactacaaaagaaaatgtcgtcttttatcgtccggaatctgctgtgtatgtgacatacagt ttgctgtgtatacatgtaccaagtgtgttctctatgacatggaatacaagttccagtatcactgtgacaaatgtggccta tgtagaataggacctgaaaagaacttttaccactgcgacacgtgtgacctgtgtgtaaacaaaagtatggagcatgagac aaggaaagtgtccaaaatgcctagaggattgatatag |
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Protein
| Protein ID | pfu_aug2.0_438.1_27392.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_438.1_27392.t1 MVNSICQLPWDMYVQRTPYLNCRRIYNCGPDVVAIRSGHNSEACYAAKFCRCDYTNCFYGSNACVCRKQWTACGVNHTLN SDGKCVPCPDGFYKPNNGCHSCYKIDPYKASYNTPPTTTKRPIPRTSTTSPTSTASPRLASNRSQGSSYDTSSQSNVVVI TDKASSVGVTVSSARKSLSQRESSTTEAESNPTVPIVVVTIPQTDHGSGKPSLESQSSGISSQSATISESVSTPVLETGT SPAAHPLEIYRSISSETSPFLTEIILSHMSKSTDDVSLNADPQQQDSNVMCNNDESSTTPAPNSISSSCPSPIVSDSIQT VDTNDHRISIVGLEMCSFESDESEACEYCCECAQYLCETCAKQHTKIKKFKHHHYIRATVACLSGLDKAITTCPKHDGQE LKYHCEDDGHSMCGECKDAHVGHHFIEIQDKCNDLMKSIGKRLSVPVPKDGIRKTKVEFTKRIENLSYLVKERNEFLKTK LDDMEYRLQEELKKYNGSIAQFFDEKIEKAEEKERIRKTFEQDVSIREGASLYQYLIDLDKRFGKMSDAKSKPGIPTLID TSIDVQTDGQKYLAALQMYINGPLKGDSEDGCEHYKRKCRLLSSGICCVCDIQFAVYTCTKCVLYDMEYKFQYHCDKCGL CRIGPEKNFYHCDTCDLCVNKSMEHETRKVSKMPRGLI |
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