Gene
Gene Model ID | pfu_aug2.0_438.1_27394 |
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Locus | scaffold438.1 : 122036 ... 126495 : + |
To GenomeBrowser | scaffold438.1:122036..126495 |
Genes list of scaffold | scaffold438.1 |
Synonym | pfu_aug1.0_24692.1_26195 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_438.1_27394.t1 | 2 | 1 | HLH | 1 | 51 | 1.3e-12 | 47.2 | 1.7e-15 | 1.3e-11 | 44.0 |
pfu_aug2.0_438.1_27394.t1 | 1 | 1 | Hairy_orange | 63 | 98 | 1.3e-09 | 37.6 | 4.1e-13 | 3.1e-09 | 36.4 |
pfu_aug2.0_438.1_27394.t1 | 2 | 2 | HLH | 64 | 82 | 1.3e-12 | 47.2 | 0.26 | 1900.0 | -1.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_438.1_27394.t1 | gi|498998523|ref|XP_004554260.1| | PREDICTED: transcription factor HES-4 isoform X2 [Maylandia zebra] | 9.0e-29 |
pfu_aug2.0_438.1_27394.t1 | gi|542210639|ref|XP_005478257.1| | PREDICTED: transcription factor HES-4-B-like isoform X2 [Oreochromis niloticus] | 1.0e-28 |
pfu_aug2.0_438.1_27394.t1 | gi|583980577|ref|XP_006785603.1| | PREDICTED: transcription factor HES-4-B-like isoform X2 [Neolamprologus brichardi] | 1.0e-28 |
pfu_aug2.0_438.1_27394.t1 | gi|658857773|ref|XP_008411571.1| | PREDICTED: transcription factor HES-4 isoform X2 [Poecilia reticulata] | 2.0e-28 |
pfu_aug2.0_438.1_27394.t1 | gi|617486288|ref|XP_007577387.1| | PREDICTED: transcription factor HES-4 isoform X2 [Poecilia formosa] | 2.0e-28 |
Transcript
Transcript ID | pfu_aug2.0_438.1_27394.t1 |
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Definition | - |
>pfu_aug2.0_438.1_27394.t1 atggagaagaaaagaagagcgagaataaattccagtctttccgaattgaaatcgctgctacaagatgttattaaagagga gggtgcccgccacaataagatggaaaaggccgacatcttggaaatgaccgtacgatatctacgaagagttcagcagcaaa gatgttcaggccgaccatctacctccagtaagtacagattgggcttcaatgaatgtatctccgagatcggcaagtttctg aagacatcagacaacgttgacccggatgtacatgccaaagttctcgatcatcttgtcaaccaatcattcgagaaagattc gaccaatgaaaccgaagatgacattttaaaaagtccttttgatgtgaacaataataacggaattaaaacttcacctctca aaaacgatcgaatgtatgaacgaaattgtgaaagtcacggacttagagtaactgctggtggaaatccgactgttgtatcg ccgcaagccacatcaaccaatgaaaatgcacaaaatttgatttgcaccaatcaaacgcagataccgtatcaagtgtataa ccctcctcagcagcagatccaacaggtgattcaaactgtatctcaacctaacatcgtgagtggtgttcaactcataccaa caacaagtcttgtttccggacaggtggccttcattctccctgcaaatcccgtccaaacaggaccagttgtaaactgcgta gttgccaaccaaccacacatctcaagccagtctccaatctcaaaccaaccacaaatcgcaaaccagtcacagatcttcaa tcagcaacaaattgcaaagcagacacaaagtattgaatccctttcaatgcctacttccattaactataccagtccgcaaa cgtttacaccgattacattaacaagcatggcatcttgtgaaagtaaatctgtggcactacctactggaaatacgagttgt caaaaccgaaggactgtaataaatgagccaaaaacaatgtcagcaggcttcggcagcaaagcacaatttctcaatttgcc gttgattgcaccaaaacccatgtctgatgttgatacgagattttgcaagtcgaattcaccagaagatcagaatgtttgga ggccatggtag |
Protein
Protein ID | pfu_aug2.0_438.1_27394.t1 |
---|---|
Definition | - |
>pfu_aug2.0_438.1_27394.t1 MEKKRRARINSSLSELKSLLQDVIKEEGARHNKMEKADILEMTVRYLRRVQQQRCSGRPSTSSKYRLGFNECISEIGKFL KTSDNVDPDVHAKVLDHLVNQSFEKDSTNETEDDILKSPFDVNNNNGIKTSPLKNDRMYERNCESHGLRVTAGGNPTVVS PQATSTNENAQNLICTNQTQIPYQVYNPPQQQIQQVIQTVSQPNIVSGVQLIPTTSLVSGQVAFILPANPVQTGPVVNCV VANQPHISSQSPISNQPQIANQSQIFNQQQIAKQTQSIESLSMPTSINYTSPQTFTPITLTSMASCESKSVALPTGNTSC QNRRTVINEPKTMSAGFGSKAQFLNLPLIAPKPMSDVDTRFCKSNSPEDQNVWRPW |