Gene
| Gene Model ID | pfu_aug2.0_438.1_27395 |
|---|---|
| Locus | scaffold438.1 : 187511 ... 195273 : + |
| To GenomeBrowser | scaffold438.1:187511..195273 |
| Genes list of scaffold | scaffold438.1 |
| Synonym | pfu_aug1.0_152150.1_35587 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_438.1_27395.t1 | 1 | 1 | HLH | 96 | 153 | 1.6e-13 | 50.1 | 7.1e-17 | 3.5e-13 | 49.0 |
| pfu_aug2.0_438.1_27395.t1 | 2 | 1 | Hairy_orange | 169 | 208 | 1.9e-15 | 56.2 | 3.5e-18 | 1.7e-14 | 53.2 |
| pfu_aug2.0_438.1_27395.t1 | 2 | 2 | Hairy_orange | 234 | 247 | 1.9e-15 | 56.2 | 0.14 | 670.0 | 0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_438.1_27395.t1 | gi|148231081|ref|NP_001079386.1| | transcription factor HES-1-B [Xenopus laevis] | 0.0 |
| pfu_aug2.0_438.1_27395.t1 | gi|260793446|ref|XP_002591723.1| | hypothetical protein BRAFLDRAFT_265744 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_438.1_27395.t1 | gi|148225440|ref|NP_001081396.1| | transcription factor HES-1-A [Xenopus laevis] | 0.0 |
| pfu_aug2.0_438.1_27395.t1 | gi|157278421|ref|NP_001098313.1| | transcription factor HES-1 [Oryzias latipes] | 1.4013e-45 |
| pfu_aug2.0_438.1_27395.t1 | gi|742101986|ref|XP_010869548.1| | PREDICTED: transcription factor HES-1 [Esox lucius] | 2.8026e-45 |
Transcript
| Transcript ID | pfu_aug2.0_438.1_27395.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_438.1_27395.t1 atgaagctttcgcgttccgatacattcgaccaaccaggcacaatgtcacacgagcagaggcggggcttgtacaaaatgat tgacgggagaagagaaattgctaactttcccacgagagagtaccgtgcgtatgtttttccctgttttgacatgaaagcaa caggtattttatcaaacggagggcgcgtgaccgagccattccttaccattccttcacatgacaaaatggaggaacaagaa aaagccatgaattccgataaagtatcatccacagcatccgagggacgaaaaagttctaaacctataatggagaagaggag acgagcacgaatcaacgccagtctggcagagttaaagtctctgcttctagaggtcatgaaatccgagggaacgcgccaaa acaaaatggagaaggcggacatattggaaatgacagtgcgccatctacgtcagttacaacatcaacagatatcagctctt gcgtcaacagacccagctgtgataaacaaatatcgacttggatttaacgagtgtgcaaatgaagtcagtaaatttcttgg aaatatgaacggtattgatgcagaaattcgggcaagacttctcaaccacttagccaactataccgtaaagcccgatcccg aaacaccggatgtaagcagcagcatgcgtgacactccttccactcttccttcaacaagtttgtgcaaagatgaaacgacc cgtgttttgaacaatccacagtcatcttctgtcataaatcaaggaatggtttacggaaaaaataacaacttacaaccgct gtcaatagtaacccagactgcgactccgtcaagtactgtacaggaagtggaaaaacaacttcctgtaattccgaattttt cgtcgccgcaaaaaatggctacttcgtctctgtgttcatttccctctgtaccggaagcgtctgctcaacctcttcagatt gccaaagtgtttggaggctttcaagccataccaaccaagatggcctccggtgaaatggcttttcttattccggcggcgaa tatgatgtcatgtaacagtattccaaattacgtcattccagtcatacagccgcaatcgtcagtatctattgcaaatcaaa ccggacagaatatgcaaaacatttcgccgttgcaaatatcctaccccgtaaacagtattgtgacacctgtcgtgtctcag tcagctattacgtcagctggagtcaccggaaacggaaacaacgctacgcgtgcgcaaacgatacttccacaatctttatt atctgtgagctacacgtctggtagagaattacaaactactactttggattcgaccacagtaacgtctagtgctttcagtt cattgaaggatgtttcccagcatgctttgcctgacaaccggaaccgggattcagaaagaaatgctgcatccgcttcagga attgcctcgtcgaccagcagatcttctccctctgaaatttcacctgtgagtgggtcagacccgtccacggatccaatgtg gcgtccttggtga |
|
Protein
| Protein ID | pfu_aug2.0_438.1_27395.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_438.1_27395.t1 MKLSRSDTFDQPGTMSHEQRRGLYKMIDGRREIANFPTREYRAYVFPCFDMKATGILSNGGRVTEPFLTIPSHDKMEEQE KAMNSDKVSSTASEGRKSSKPIMEKRRRARINASLAELKSLLLEVMKSEGTRQNKMEKADILEMTVRHLRQLQHQQISAL ASTDPAVINKYRLGFNECANEVSKFLGNMNGIDAEIRARLLNHLANYTVKPDPETPDVSSSMRDTPSTLPSTSLCKDETT RVLNNPQSSSVINQGMVYGKNNNLQPLSIVTQTATPSSTVQEVEKQLPVIPNFSSPQKMATSSLCSFPSVPEASAQPLQI AKVFGGFQAIPTKMASGEMAFLIPAANMMSCNSIPNYVIPVIQPQSSVSIANQTGQNMQNISPLQISYPVNSIVTPVVSQ SAITSAGVTGNGNNATRAQTILPQSLLSVSYTSGRELQTTTLDSTTVTSSAFSSLKDVSQHALPDNRNRDSERNAASASG IASSTSRSSPSEISPVSGSDPSTDPMWRPW |
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