Gene
| Gene Model ID | pfu_aug2.0_439.1_30757 |
|---|---|
| Locus | scaffold439.1 : 41276 ... 64630 : + |
| To GenomeBrowser | scaffold439.1:41276..64630 |
| Genes list of scaffold | scaffold439.1 |
| Synonym | pfu_aug1.0_39355.1_05073 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_439.1_30757.t1 | 2 | 1 | Helicase_C_3 | 140 | 228 | 8.3e-23 | 80.5 | 3.1e-25 | 1.1e-21 | 76.8 |
| pfu_aug2.0_439.1_30757.t1 | 2 | 1 | ResIII | 361 | 390 | 5.9e-13 | 49.0 | 0.064 | 240.0 | 1.4 |
| pfu_aug2.0_439.1_30757.t1 | 2 | 2 | ResIII | 398 | 553 | 5.9e-13 | 49.0 | 3.2e-15 | 1.2e-11 | 44.7 |
| pfu_aug2.0_439.1_30757.t1 | 1 | 1 | SNF2_N | 415 | 562 | 7.6e-07 | 28.2 | 3.4e-10 | 1.3e-06 | 27.4 |
| pfu_aug2.0_439.1_30757.t1 | 2 | 2 | Helicase_C_3 | 599 | 623 | 8.3e-23 | 80.5 | 0.16 | 600.0 | 0.1 |
| pfu_aug2.0_439.1_30757.t1 | 1 | 1 | Helicase_C | 662 | 730 | 1.9e-10 | 40.4 | 1.2e-13 | 4.4e-10 | 39.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_439.1_30757.t1 | gi|524882918|ref|XP_005098095.1| | PREDICTED: TFIIH basal transcription factor complex helicase XPB subunit-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_439.1_30757.t1 | gi|260821664|ref|XP_002606152.1| | hypothetical protein BRAFLDRAFT_126483 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_439.1_30757.t1 | gi|676484434|ref|XP_009063345.1| | hypothetical protein LOTGIDRAFT_207144 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_439.1_30757.t1 | gi|562849979|ref|XP_006153758.1| | PREDICTED: TFIIH basal transcription factor complex helicase XPB subunit isoform X1 [Tupaia chinensis] | 0.0 |
| pfu_aug2.0_439.1_30757.t1 | gi|478499318|ref|XP_004423985.1| | PREDICTED: TFIIH basal transcription factor complex helicase XPB subunit [Ceratotherium simum simum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_439.1_30757.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_439.1_30757.t1 atgaaaagaaccaaattgcacaagaataaagatcaaacaaaagtggagggaggcctccgttttattatgctgagatcaat caagtttattggggggatagagcaggaaagaaaagccaaaaaatcgaaatacaaacaagaggacccagactttgaagatg acgatgctgcagatctaccggaagtttcttcagaagacatgccacaggctgcctccagaaatgtagacgacaatacaaaa gaagatgaattcggagctaaagattacagagggatattggaactcaaactggaccatcagtcaaggccactatgggtggc tgcctccagaaatgtagacgataatacaaaagaagatgaattcggagctaaagattacagagggatattggaactcaaac tggaccatcagtcaaggccactatgggtggctccaaatggacacatttttctggaatcgttttctccggtatataaacat gcacatgattttctgattgcaatttccgagccagtatgtagacctgagttcatacatgagtacaaattgacggcatactc actgtacgctgcagtgtcggtcggcttggaaacaggggacatcatagagtacttacgcaggctaagtaagacaactcttc catccggtattgaagaattcatcaaggatgtgattcagagattactgaaagatcctgttatacaggaatgtcgacttaga ccagaactgactgagactgaactggtagaaggtcaagtcacctccaaatcagcgttacaggttaacaaacctgcaacagc caatcaggagccaaagccaggcacttcttcaggggaggtcactgaggaaactcccggagaaacagctgtaccagaggaca tacatgctttctacgataaaatggataaagaagaagaagaaggggaagatctcaaaactgtctcatttgaagtgaagcaa gagagcatagaagtcattcaaaaaagatgtattgaaatggagtaccctctattagcggaatatgacttcagaaacgatac acacaatccagatatcaatattgatttaaagccttccacagtattgcggccatatcaggagaaaagtttacggaaaatgt ttggaaatggtcgagccagatctggagtcatagttttaccctgtggtagtattgatttaaagccttccacagtattgcgg ccatatcaggagaaaagtttacggaaaatgtttggaaatggtcgagccagatctggagtcatagttttaccctgtggtgc gggtaaaactctagttggagtaactgcagcatgcactgtaaggaagagatgtatatgtctagcaacatcaggggtcgctg tagaacagtggagatcacagttcaagatgtggtcaacggcagatgacagtataatatgtaggtttacatcggatgccaag gataaacctataggttcacagatattgataagcacatactccatgttggctcacacgaccaaacgatcatgggaggcgga gaaagtaatggagtggatgcagagtcaggaatggggtttaatggtgctggacgaggtccagaccattccggccaagatgt ttcggcgagtattgaccatcgtaaatgcccactgtaaattgggactgaccgctacactggtcagggaagatgacaaaata gccgatctgaactttctgatcggtccaaaattatatgaagccaactggatggagcttcagaataaaggattcattgccag agtccaatgtgccgaggtatggtgtccaatggccccagaattctacagagagtatctggcaacaaagtccatcaagaaac tgctgctggctgttgtgaatccaaacaaattccgagcatgccaatttctgatccgataccatgagagacggaatgataaa ataatcgtattctctgacaatgtatttgccctgaaaagctatgctataaggctgaacaaaccgtatttatatggtcccac atcccagggagaaaggatgcagattcttcagaatttccagcataatccgagagttaatactatctttgtatccaaggttg cagacacatcctttgatttgccggaagctaatgtactgatccagatctcagctcatggtggatccaggaggcaagaagct caaagactcggcagaattctcagggccaagaaaggtgctgttgccgaggaatacaacgcctttttctactcgttggtgtc acaggatacgcaggaaatgcactattccctaaaacgacaacggtttctggtaaaccaaggctatgcctacaaagtcatca ccaaactagcgggaatggaacaggaggacctagcatacagtactaaggaagaacagctacaattactacaaaaagtatta gcggccacggaacaagacgcagaggaggaatatgcagccggagattccggaggttcaaaggtcagtagaaaagttggcag catgagttcaatgtctggggctgatgacaacctatacatggagttcagaaataagaaatctgctgcgaacgccagtcatc ttcatccattgttcaagaagttcagacagtga |
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Protein
| Protein ID | pfu_aug2.0_439.1_30757.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_439.1_30757.t1 MKRTKLHKNKDQTKVEGGLRFIMLRSIKFIGGIEQERKAKKSKYKQEDPDFEDDDAADLPEVSSEDMPQAASRNVDDNTK EDEFGAKDYRGILELKLDHQSRPLWVAASRNVDDNTKEDEFGAKDYRGILELKLDHQSRPLWVAPNGHIFLESFSPVYKH AHDFLIAISEPVCRPEFIHEYKLTAYSLYAAVSVGLETGDIIEYLRRLSKTTLPSGIEEFIKDVIQRLLKDPVIQECRLR PELTETELVEGQVTSKSALQVNKPATANQEPKPGTSSGEVTEETPGETAVPEDIHAFYDKMDKEEEEGEDLKTVSFEVKQ ESIEVIQKRCIEMEYPLLAEYDFRNDTHNPDINIDLKPSTVLRPYQEKSLRKMFGNGRARSGVIVLPCGSIDLKPSTVLR PYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVGVTAACTVRKRCICLATSGVAVEQWRSQFKMWSTADDSIICRFTSDAK DKPIGSQILISTYSMLAHTTKRSWEAEKVMEWMQSQEWGLMVLDEVQTIPAKMFRRVLTIVNAHCKLGLTATLVREDDKI ADLNFLIGPKLYEANWMELQNKGFIARVQCAEVWCPMAPEFYREYLATKSIKKLLLAVVNPNKFRACQFLIRYHERRNDK IIVFSDNVFALKSYAIRLNKPYLYGPTSQGERMQILQNFQHNPRVNTIFVSKVADTSFDLPEANVLIQISAHGGSRRQEA QRLGRILRAKKGAVAEEYNAFFYSLVSQDTQEMHYSLKRQRFLVNQGYAYKVITKLAGMEQEDLAYSTKEEQLQLLQKVL AATEQDAEEEYAAGDSGGSKVSRKVGSMSSMSGADDNLYMEFRNKKSAANASHLHPLFKKFRQ |
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