Gene
| Gene Model ID | pfu_aug2.0_44.1_13461 |
|---|---|
| Locus | scaffold44.1 : 110696 ... 120292 : + |
| To GenomeBrowser | scaffold44.1:110696..120292 |
| Genes list of scaffold | scaffold44.1 |
| Synonym | pfu_aug1.0_3987.1_37763 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein pat1 homolog 1 | GO:0003723 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_44.1_13461.t1 | 1 | 1 | PAT1 | 33 | 75 | 6.0e-06 | 24.8 | 4.9e-10 | 7.2e-06 | 24.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_44.1_13461.t1 | gi|395544279|ref|XP_003774039.1| | 2.0e-12 | |
| pfu_aug2.0_44.1_13461.t1 | gi|612034836|ref|XP_007497602.1| | PREDICTED: protein PAT1 homolog 1 [Monodelphis domestica] | 2.0e-12 |
| pfu_aug2.0_44.1_13461.t1 | gi|558103677|ref|XP_006110371.1| | PREDICTED: protein PAT1 homolog 1 [Pelodiscus sinensis] | 6.0e-12 |
| pfu_aug2.0_44.1_13461.t1 | gi|591362015|ref|XP_007055920.1| | PREDICTED: protein PAT1 homolog 1 [Chelonia mydas] | 1.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_44.1_13461.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_44.1_13461.t1 atgttagctctaccagatgatgccagaaaaccgctgtttgaggacaggaaaaacatgctgagtgatctctacaagtacct actatgtacacacaggaatgaacactttctctctatattgtctataaggaaagggagaaaactcatcagcagggtccttc cacttcttgaaaagaggcagtcagaggatatagtgctgaagatactgaaaaatctacagtacctgatcaagaaagactct ggggaagagggcctgatggtgctacatgaccctgtgatacttgtgatagaaaactcagatctggaagctctggtcaagtt ctctgatgaactgaaggagacaggtcagaaccaaaccaaggcaacagctgtggcaatacaaaataagatctaa |
|
Protein
| Protein ID | pfu_aug2.0_44.1_13461.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_44.1_13461.t1 MLALPDDARKPLFEDRKNMLSDLYKYLLCTHRNEHFLSILSIRKGRKLISRVLPLLEKRQSEDIVLKILKNLQYLIKKDS GEEGLMVLHDPVILVIENSDLEALVKFSDELKETGQNQTKATAVAIQNKI |
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