Gene
| Gene Model ID | pfu_aug2.0_44.1_13476 |
|---|---|
| Locus | scaffold44.1 : 458383 ... 476497 : + |
| To GenomeBrowser | scaffold44.1:458383..476497 |
| Genes list of scaffold | scaffold44.1 |
| Synonym | pfu_aug1.0_23670.1_40437 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein phosphatase pp2a 55 kda regulatory subunit-like isoform 2 | GO:0050789 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_44.1_13476.t1 | 6 | 1 | WD40 | 5 | 29 | 3.3e-13 | 48.9 | 0.00016 | 0.8 | 9.6 |
| pfu_aug2.0_44.1_13476.t1 | 6 | 2 | WD40 | 88 | 98 | 3.3e-13 | 48.9 | 0.0018 | 9.0 | 6.3 |
| pfu_aug2.0_44.1_13476.t1 | 6 | 3 | WD40 | 149 | 178 | 3.3e-13 | 48.9 | 0.0025 | 12.0 | 5.9 |
| pfu_aug2.0_44.1_13476.t1 | 6 | 4 | WD40 | 205 | 232 | 3.3e-13 | 48.9 | 0.00021 | 1.1 | 9.3 |
| pfu_aug2.0_44.1_13476.t1 | 6 | 5 | WD40 | 268 | 290 | 3.3e-13 | 48.9 | 0.0013 | 6.3 | 6.8 |
| pfu_aug2.0_44.1_13476.t1 | 6 | 6 | WD40 | 338 | 357 | 3.3e-13 | 48.9 | 0.0047 | 23.0 | 5.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_44.1_13476.t1 | gi|542169209|ref|XP_005493159.1| | PREDICTED: serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform [Zonotrichia albicollis] | 0.0 |
| pfu_aug2.0_44.1_13476.t1 | gi|551488011|ref|XP_005795582.1| | PREDICTED: serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_44.1_13476.t1 | gi|507642993|ref|XP_004630797.1| | 0.0 | |
| pfu_aug2.0_44.1_13476.t1 | gi|645021246|ref|XP_008207502.1| | PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit isoform X3 [Nasonia vitripennis] | 0.0 |
| pfu_aug2.0_44.1_13476.t1 | gi|752867469|ref|XP_011250763.1| | PREDICTED: protein phosphatase PP2A 55 kDa regulatory subunit isoform X2 [Camponotus floridanus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_44.1_13476.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_44.1_13476.t1 atgtctgctgacataatatcctgtgtagaattcaatagcaatggtgaccttctggcaactggtgataaaggaggacgtgt tgtcattttccagcgcgacaagatgggcaagatggctgttcctagtcgtggggaatataatgtatacagcaccttccaaa gtcacgagccagaatttgattatttgaagagcttagaaattgaagagaaaataaacaagatccgctggctaaagcgcaca aacccagccaactttcttctgtctacaaatgataaaacaattaaactttggaaagtcacagagagagacaagcgtcctga gggctacaacctgaaggatgagtctggccttatgaaggatccaagttcactcacatcactcagagtgccaatcttcaagc ccatggagctcatggtggaagccagtccgcgccgaatctttgctaatgctcatacataccacatcaactctatatctgtc aacagtgaccaggaaacatacctgtctgctgatgacctacgtattaatttgtggcatttagaagtcacagaccaaagctt catatttgaggagcccgaggaccctacaaatagaagttttttctccgaaattatatccagtatatcagatgttaaattta gtcataatggacgttacatggtgacgcgtgactacctgtctgtcaaagtctgggatttattgatggaaactaaaccaatc gaaacgtatcaagtgcatgaatatttgaggagtaaattgtgttctttatatgaaaatgattgtatatttgacaagtttga atgttcctggagtggggatgataggcagataatgactggctcatacaacaatttcttccgcatgttcgacagggaaacaa aacgtgatatcacattagaggcttgtagagacaatatgaaaccaaggacagtactcaaacccaggaaagtctgcaccggt ggaaaacgcaagaaagaagaaattaccgtcgactgtttggactttaataagaagatactacacacagcttggcatcccaa cgaaaatatactggctgtggcggccacaaataacttgtatatcttccaaagtaaagattaa |
|
Protein
| Protein ID | pfu_aug2.0_44.1_13476.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_44.1_13476.t1 MSADIISCVEFNSNGDLLATGDKGGRVVIFQRDKMGKMAVPSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLKRT NPANFLLSTNDKTIKLWKVTERDKRPEGYNLKDESGLMKDPSSLTSLRVPIFKPMELMVEASPRRIFANAHTYHINSISV NSDQETYLSADDLRINLWHLEVTDQSFIFEEPEDPTNRSFFSEIISSISDVKFSHNGRYMVTRDYLSVKVWDLLMETKPI ETYQVHEYLRSKLCSLYENDCIFDKFECSWSGDDRQIMTGSYNNFFRMFDRETKRDITLEACRDNMKPRTVLKPRKVCTG GKRKKEEITVDCLDFNKKILHTAWHPNENILAVAATNNLYIFQSKD |
|