Gene
| Gene Model ID | pfu_aug2.0_44.1_13480 |
|---|---|
| Locus | scaffold44.1 : 528073 ... 536656 : - |
| To GenomeBrowser | scaffold44.1:528073..536656 |
| Genes list of scaffold | scaffold44.1 |
| Synonym | pfu_aug1.0_4424.1_30692 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| f-box wd repeat-containing protein 1a isoform x4 | GO:0000209 GO:0004842 GO:0006470 GO:0008013 GO:0016874 GO:0019005 GO:0031648 GO:0033598 GO:0042753 GO:0043122 GO:0043161 GO:0045309 GO:0045862 GO:0045892 GO:0045893 GO:0046983 GO:0051726 GO:0060444 GO:0061136 GO:0071407 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_44.1_13480.t1 | 1 | 1 | Beta-TrCP_D | 29 | 68 | 4.6e-24 | 83.7 | 5.1e-27 | 9.4e-24 | 82.7 |
| pfu_aug2.0_44.1_13480.t1 | 1 | 1 | F-box | 75 | 120 | 3.4e-07 | 29.7 | 4.5e-10 | 8.3e-07 | 28.5 |
| pfu_aug2.0_44.1_13480.t1 | 2 | 1 | F-box-like | 83 | 119 | 1.3e-09 | 37.6 | 1.9e-12 | 3.5e-09 | 36.2 |
| pfu_aug2.0_44.1_13480.t1 | 2 | 2 | F-box-like | 123 | 131 | 1.3e-09 | 37.6 | 2.0 | 3800.0 | -2.3 |
| pfu_aug2.0_44.1_13480.t1 | 6 | 1 | WD40 | 194 | 219 | 0.0 | 166.3 | 1.0e-06 | 0.0019 | 18.0 |
| pfu_aug2.0_44.1_13480.t1 | 6 | 2 | WD40 | 230 | 268 | 0.0 | 166.3 | 2.5e-10 | 4.6e-07 | 29.4 |
| pfu_aug2.0_44.1_13480.t1 | 6 | 3 | WD40 | 279 | 311 | 0.0 | 166.3 | 6.2e-11 | 1.2e-07 | 31.3 |
| pfu_aug2.0_44.1_13480.t1 | 6 | 4 | WD40 | 316 | 351 | 0.0 | 166.3 | 1.5e-10 | 2.9e-07 | 30.1 |
| pfu_aug2.0_44.1_13480.t1 | 6 | 5 | WD40 | 356 | 391 | 0.0 | 166.3 | 9.5e-13 | 1.8e-09 | 37.1 |
| pfu_aug2.0_44.1_13480.t1 | 6 | 6 | WD40 | 406 | 440 | 0.0 | 166.3 | 2.1e-08 | 3.8e-05 | 23.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_44.1_13480.t1 | gi|676439535|ref|XP_009048884.1| | hypothetical protein LOTGIDRAFT_238545 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_44.1_13480.t1 | gi|284005049|ref|NP_001164686.1| | beta-TCRP E3 ligase [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_44.1_13480.t1 | gi|557331950|ref|XP_006038802.1| | PREDICTED: F-box/WD repeat-containing protein 1A-like [Alligator sinensis] | 0.0 |
| pfu_aug2.0_44.1_13480.t1 | gi|514761391|ref|XP_005023244.1| | PREDICTED: F-box/WD repeat-containing protein 1A isoform X1 [Anas platyrhynchos] | 0.0 |
| pfu_aug2.0_44.1_13480.t1 | gi|699596622|ref|XP_009868421.1| | PREDICTED: F-box/WD repeat-containing protein 1A [Apaloderma vittatum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_44.1_13480.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_44.1_13480.t1 atgacgacttcagaacaaataagggactaccaggtagacaaacctcaaccttcagaacagtatttaaaggatagggacac ttgtaccaagtattttgaaaactggacagagtatgaccaaatccagtttgtgcaggatttactctcacgaatgtgtcatt atcaacatggtcaaataaattcatttttaaagccaatgcttcagagagatttcatttcagcattacctgctaagggctta gaccatgtggcagaaagtatcctttcatttttggatgccaaatccctatgtgcagcagaattggtttgtaaagaatggta ccgagtgatctccgaaggaatgttatggaaaaagttaatagagagaatggtccgaacagatagtttgtggagaggcttgg ctgaacgcagggggtggggtatttatctcttcaaacccaaacacggagaaattccaaaggaccacaaattttataggaat ctttatccacaaataatccaagatatagatagaattgagaataactggagaactggtcgacacacactacagaggattca gtgtcgtagcgagaccagtaaaggggtgtactgtttacagtatgatgagactcgaatcatcagcggactgagggataaca ccatcaaagtctggaaatcaaaaacgatgtgggacagaactacactagagtgtacacaagtactgactggtcacacagga tctgtgctgtgcctacagtatgatgacaatattataatatcaggctctagtgattccactgaccgatcaatagcagtgtg ggacatgcagtctcctactgaaatcaatttacgtagagttctggtcggtcatagggctgctgtcaatgttgtagactttg atgaaaagtatatagtctctgcctcaggagacagaaccatcaaggtttggagtacatcttcctgtgagtttgtaaggact ttgaatggacataagcgaggtattgcctgtttacagtacagagataggctcgtggtcagtggcagctcagataatactat aagactatgggatattgaatgtggggcatgtttacgagtattggagggacatgaagaactagttcgctgtattaggtttg acaataagcgcattgttagtggtgcctacgatgggaaaattaaggtatgggacttggcagcagcattagatccacgtgcc ccagcgggaacactctgtctcagaactctagtggaacattcaggacgtgtattccgtctacagtttgacgagttccaaat tgtcagcagctcacatgatgatactatactcatatgggacttccttaacgtgcctgtccctgagggtagtagtggggcaa accgctccccatcacgcaactataactatgtatctatacctacgtaa |
|
Protein
| Protein ID | pfu_aug2.0_44.1_13480.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_44.1_13480.t1 MTTSEQIRDYQVDKPQPSEQYLKDRDTCTKYFENWTEYDQIQFVQDLLSRMCHYQHGQINSFLKPMLQRDFISALPAKGL DHVAESILSFLDAKSLCAAELVCKEWYRVISEGMLWKKLIERMVRTDSLWRGLAERRGWGIYLFKPKHGEIPKDHKFYRN LYPQIIQDIDRIENNWRTGRHTLQRIQCRSETSKGVYCLQYDETRIISGLRDNTIKVWKSKTMWDRTTLECTQVLTGHTG SVLCLQYDDNIIISGSSDSTDRSIAVWDMQSPTEINLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWSTSSCEFVRT LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLAAALDPRA PAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNVPVPEGSSGANRSPSRNYNYVSIPT |
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