Gene
| Gene Model ID | pfu_aug2.0_443.1_10777 |
|---|---|
| Locus | scaffold443.1 : 33447 ... 46245 : - |
| To GenomeBrowser | scaffold443.1:33447..46245 |
| Genes list of scaffold | scaffold443.1 |
| Synonym | pfu_aug1.0_3926.1_08770 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rhotekin-like isoform x4 | GO:0005488 GO:0007165 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_443.1_10777.t1 | 2 | 1 | HR1 | 4 | 16 | 1.0e-05 | 25.1 | 1.0 | 7400.0 | -3.3 |
| pfu_aug2.0_443.1_10777.t1 | 2 | 2 | HR1 | 61 | 116 | 1.0e-05 | 25.1 | 2.2e-09 | 1.7e-05 | 24.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_443.1_10777.t1 | gi|260809260|ref|XP_002599424.1| | hypothetical protein BRAFLDRAFT_287730 [Branchiostoma floridae] | 2.0e-23 |
| pfu_aug2.0_443.1_10777.t1 | gi|390352718|ref|XP_786885.3| | PREDICTED: rhotekin isoform X1 [Strongylocentrotus purpuratus] | 7.0e-20 |
| pfu_aug2.0_443.1_10777.t1 | gi|597790037|ref|XP_007258397.1| | PREDICTED: rhotekin-like [Astyanax mexicanus] | 2.0e-18 |
| pfu_aug2.0_443.1_10777.t1 | gi|557024909|ref|XP_006012621.1| | PREDICTED: rhotekin-like isoform X4 [Latimeria chalumnae] | 1.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_443.1_10777.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_443.1_10777.t1 atgcgcaaagacacactgcgtggtactttacggagacgaatgtcgatgacaataatgaaaaagaagatgaggacatttca ggattattctttgccttataattctaactttggttacatcgataaaatagctgttggtttaggagtggggcagttgttca acccttggattttaaaggaccatgacctgcagcaaaagatcgatcatgagattaagatgcgggaagggacggccaaactt ttggcggcgtcaaagcaccccgcccagatgatagaggccgctaagaaccttctcacctctaacacaagaataatggcata catgacagaactacaaaaacgtaaaacggcggaggtccttggcagaaatactgcatactattgttttacagttcagtgga aggtaaccaattaccctgcagggccaaagtcagtgtctcagatatcagaatacctctcatgtggaaagattccgaccact ttaaaaataaaggagattatagacgttatgctgtattttgcctgttga |
|
Protein
| Protein ID | pfu_aug2.0_443.1_10777.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_443.1_10777.t1 MRKDTLRGTLRRRMSMTIMKKKMRTFQDYSLPYNSNFGYIDKIAVGLGVGQLFNPWILKDHDLQQKIDHEIKMREGTAKL LAASKHPAQMIEAAKNLLTSNTRIMAYMTELQKRKTAEVLGRNTAYYCFTVQWKVTNYPAGPKSVSQISEYLSCGKIPTT LKIKEIIDVMLYFAC |
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