Gene
| Gene Model ID | pfu_aug2.0_445.1_17437 |
|---|---|
| Locus | scaffold445.1 : 135776 ... 151533 : + |
| To GenomeBrowser | scaffold445.1:135776..151533 |
| Genes list of scaffold | scaffold445.1 |
| Synonym | pfu_aug1.0_205.1_22084 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein farnesyltransferase geranylgeranyltransferase type-1 subunit alpha | GO:0004661 GO:0007154 GO:0009893 GO:0015631 GO:0018342 GO:0044424 GO:0044700 GO:0050794 GO:0065009 GO:1990234 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_445.1_17437.t1 | 6 | 1 | PPTA | 67 | 96 | 0.0 | 162.7 | 6.4e-14 | 4.8e-10 | 38.3 |
| pfu_aug2.0_445.1_17437.t1 | 6 | 2 | PPTA | 102 | 132 | 0.0 | 162.7 | 9.5e-14 | 7.1e-10 | 37.8 |
| pfu_aug2.0_445.1_17437.t1 | 6 | 3 | PPTA | 136 | 165 | 0.0 | 162.7 | 1.7e-13 | 1.3e-09 | 37.0 |
| pfu_aug2.0_445.1_17437.t1 | 6 | 4 | PPTA | 170 | 198 | 0.0 | 162.7 | 1.5e-10 | 1.1e-06 | 27.6 |
| pfu_aug2.0_445.1_17437.t1 | 6 | 5 | PPTA | 209 | 235 | 0.0 | 162.7 | 2.9e-11 | 2.2e-07 | 29.9 |
| pfu_aug2.0_445.1_17437.t1 | 6 | 6 | PPTA | 289 | 298 | 0.0 | 162.7 | 0.33 | 2400.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_445.1_17437.t1 | gi|676443944|ref|XP_009050268.1| | hypothetical protein LOTGIDRAFT_201479 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_445.1_17437.t1 | gi|524866733|ref|XP_005090185.1| | PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_445.1_17437.t1 | gi|533166942|ref|XP_005397133.1| | PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Chinchilla lanigera] | 0.0 |
| pfu_aug2.0_445.1_17437.t1 | gi|504165646|ref|XP_004592769.1| | PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Ochotona princeps] | 0.0 |
| pfu_aug2.0_445.1_17437.t1 | gi|743698058|ref|XP_010956008.1| | PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Camelus bactrianus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_445.1_17437.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_445.1_17437.t1 atgtcggacagcagctcagacgagggaaactcatccctggaatgggttccctataaggacagggagacatggaaagatgt cgacccagtacctcaagacgacggaccaaacccaatagtacaaattgcgtactcagataaattcagagacgtgtatgact attttcgtgctgtagttgcaaagaaagaaataagtgacagggcattagaactgacaaaggatgcagcggaactaaactca gctaattataccgtatggcattatagaaggatccttctaaaagagcttggtaaggatctgagagatgaaatgacctacat aacaaagaccatcaagagacatcccaaaaactaccaagtatggcatcatagacgtgtaatggtagagtggttaaatgatc cgtcccaggaactgggttttactgcagtaattctgaaaggtgacgcaaaaaattaccatgcatggcaacacagacaatgg gtgatcaaagaatataacctatgggagaaggaattggagtatgtagatgaattactgcatcaagatttacgtaataactc agcgtggaatcagagatattttgtcattaacaatactacaggattcaaacaagatgtggtagagagggaagtcaagtaca cacaagaatttataaagaaagctccaaataatgagagtgcgtggaattatttaaaaggggtgttgttagattttgaccta cataaatggccaggcttgttggagttctgtatgaagctgtacgaggaacgatatcgttctccctaccttatagcatgtat ggtggacgcttacgaggaaatgttagaacaaaaatgtggagagaaaaactctgtacttagtaaagcactggagctttgca actctctagcattggaatacgacacaatacgtagcgagtattggaattatgtatcacgagttctgtccaataaatttggc gaggccccagtatcaaaacctgtggacgtggggtcatga |
|
Protein
| Protein ID | pfu_aug2.0_445.1_17437.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_445.1_17437.t1 MSDSSSDEGNSSLEWVPYKDRETWKDVDPVPQDDGPNPIVQIAYSDKFRDVYDYFRAVVAKKEISDRALELTKDAAELNS ANYTVWHYRRILLKELGKDLRDEMTYITKTIKRHPKNYQVWHHRRVMVEWLNDPSQELGFTAVILKGDAKNYHAWQHRQW VIKEYNLWEKELEYVDELLHQDLRNNSAWNQRYFVINNTTGFKQDVVEREVKYTQEFIKKAPNNESAWNYLKGVLLDFDL HKWPGLLEFCMKLYEERYRSPYLIACMVDAYEEMLEQKCGEKNSVLSKALELCNSLALEYDTIRSEYWNYVSRVLSNKFG EAPVSKPVDVGS |
|