Gene
| Gene Model ID | pfu_aug2.0_445.1_17438 |
|---|---|
| Locus | scaffold445.1 : 154102 ... 177484 : + |
| To GenomeBrowser | scaffold445.1:154102..177484 |
| Genes list of scaffold | scaffold445.1 |
| Synonym | pfu_aug1.0_205.1_22085 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_445.1_17438.t1 | 14 | 1 | Laminin_EGF | 71 | 78 | 2.0e-22 | 78.8 | 7.0 | 15000.0 | -4.3 |
| pfu_aug2.0_445.1_17438.t1 | 14 | 2 | Laminin_EGF | 98 | 148 | 2.0e-22 | 78.8 | 7.0 | 15000.0 | -6.7 |
| pfu_aug2.0_445.1_17438.t1 | 14 | 3 | Laminin_EGF | 155 | 191 | 2.0e-22 | 78.8 | 7.0e-06 | 0.015 | 15.2 |
| pfu_aug2.0_445.1_17438.t1 | 14 | 4 | Laminin_EGF | 198 | 225 | 2.0e-22 | 78.8 | 0.0023 | 4.8 | 7.1 |
| pfu_aug2.0_445.1_17438.t1 | 14 | 5 | Laminin_EGF | 239 | 282 | 2.0e-22 | 78.8 | 0.015 | 31.0 | 4.6 |
| pfu_aug2.0_445.1_17438.t1 | 14 | 6 | Laminin_EGF | 282 | 319 | 2.0e-22 | 78.8 | 1.1e-06 | 0.0023 | 17.8 |
| pfu_aug2.0_445.1_17438.t1 | 14 | 7 | Laminin_EGF | 325 | 352 | 2.0e-22 | 78.8 | 1.9e-05 | 0.04 | 13.8 |
| pfu_aug2.0_445.1_17438.t1 | 14 | 8 | Laminin_EGF | 369 | 411 | 2.0e-22 | 78.8 | 8.2e-07 | 0.0017 | 18.2 |
| pfu_aug2.0_445.1_17438.t1 | 14 | 9 | Laminin_EGF | 414 | 459 | 2.0e-22 | 78.8 | 3.9e-06 | 0.0083 | 16.0 |
| pfu_aug2.0_445.1_17438.t1 | 14 | 10 | Laminin_EGF | 457 | 502 | 2.0e-22 | 78.8 | 0.00027 | 0.57 | 10.1 |
| pfu_aug2.0_445.1_17438.t1 | 14 | 11 | Laminin_EGF | 500 | 543 | 2.0e-22 | 78.8 | 0.0046 | 9.7 | 6.2 |
| pfu_aug2.0_445.1_17438.t1 | 14 | 12 | Laminin_EGF | 543 | 588 | 2.0e-22 | 78.8 | 4.0e-05 | 0.085 | 12.8 |
| pfu_aug2.0_445.1_17438.t1 | 14 | 13 | Laminin_EGF | 588 | 631 | 2.0e-22 | 78.8 | 8.9e-05 | 0.19 | 11.6 |
| pfu_aug2.0_445.1_17438.t1 | 14 | 14 | Laminin_EGF | 630 | 679 | 2.0e-22 | 78.8 | 0.38 | 810.0 | 0.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_445.1_17438.t1 | gi|556999693|ref|XP_006002786.1| | PREDICTED: multiple epidermal growth factor-like domains protein 10 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_445.1_17438.t1 | gi|528963097|ref|XP_005211468.1| | PREDICTED: multiple epidermal growth factor-like domains protein 11 isoform X5 [Bos taurus] | 0.0 |
| pfu_aug2.0_445.1_17438.t1 | gi|528963091|ref|XP_005211465.1| | PREDICTED: multiple epidermal growth factor-like domains protein 11 isoform X2 [Bos taurus] | 0.0 |
| pfu_aug2.0_445.1_17438.t1 | gi|741939460|ref|XP_010807302.1| | PREDICTED: multiple epidermal growth factor-like domains protein 11 isoform X3 [Bos taurus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_445.1_17438.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_445.1_17438.t1 atgtagatacaaggcaacatgtacctagttagagtcagtgctttagtggtgatatccattactttagtaagttgtgtgga gtccctcgcagcaggaggacctaatgtgtgccagaaaattgtaacaaggaaggatacagtaaacaaactgacacaaattc cctatgaaaaatgtacacggacttggtgtccgaatttctgggaatttttccgttgtacaaagtgctacactctgtataga actggttacaagcaggtgacagtaacaaagtacgtgacagaatatcactgttgtgatggttatatccagtcaggaaatca gtgtgtctcttactgtcagaatggttgtgaacaaggtacatgtgtaggtcctaatgactgtgagtgtgatcctgggtgga gaggtccagactgctcatcaaactgcagtgctgagacatggggtccatactgtcagagtgtatgtgattgtagcggtcac ggacaatgtgatatcaactctggtcactgtgtatgtgctgcaggttttacaggagggagttgtcaaacaaagtgcccgca tggaacatatgggcctaactgccagttgatgtgcaagtgcaagaatggtgccacatgtgcctccggcaatggcatgtgtt actgtgccgctggcttccatggtgctttctgtgagttaacatgtgattctcaaggtgaacactgtagcgatcagtgtaaa tgtcagaataacgcttcctgtgagacacagactggggcatgctcctgtaccgagggatggatgggtgctatatgtacaga gcagtgtatggagggtacacatgggaagaattgtgttgaaaagtgtacatgttataacaatgctacatgtgacaaacaaa gcggaaactgtacatgtacaccaggctatcttggatctcaatgtgaaaaggaatgtcctccaggcagatggggtcagttt tgttctggcacatgtgactgtaaaaacggtggcacgtgtgaccatgtgacaggcatgtgtacatgtgtggaggggtatac tggagcagactgtactactagtttgtgccctttatggagatacggcagtgactgtctcagtgtatgtgattgtgatgaaa gcacttcagacagctgtcatcctgggacagggcgttgtaattgcgcaccgggatttagcggaccgatatgtaacgagacc tgtcctgtaccgtattatggtgtcaagtgctcacaagtctgtcactgtcaaaacggaggcatgtgccatccagtcactgg tgaatgtcaatgtaggccaggattcacaggggacctttgtaactccacctgtgcctatggttggtatggactgaactgta cccaggaatgtcaatgtgagaatggggcgtactgccacgcccagagtgggtactgctcatgtactgagggctacaagggt agacagtgtgaggagcagtgtaacccaggtacatatggctttaactgtagctcaccgtgtgtatgtctgaacggagccca gtgtcaccatagtaatggagattgtacatgtatgccaggttacataggtgatacttgtaataccacatgcccggattatg attttggctttgaatgcagccaggattgcgtgtgtaaagttggtaatagccatggatgtgctcctcaggacggaaggtgt ttgtgtaaggaaggatggtatggagttgactgtaacagtaactgtgctgatggtctgtggggatctgattgtacaaggtc atgtgactgtaagaacgaggggtcatgtgatcagaacactggtacatgtatatgccgtgctggcttcatcgggaatgact gctcacattcttgtgaccagggccgctatggtcatagatgtgagagggattgtagccaacactgtcctggtaacctgacc tgccatcatgtgactggtcagtgtatgtcactgtcgtgcccacctggtaggatgggtatcacatgtgaacttgcatgtcc agccggtaactatggagacggatgcgtaaacaaatgtttttgctccagtggacagtattgtaatccagaagtgggttgtg tctctgtaggctttcaagagcaagttgaagagttgaagtcagaccagttatcgagcggtgctgtagcgggaattgttttg gctgtgatattggttgctgttatcgttatcatgatggttatctattacaaaagacgtgtgggtagactaaaggctgagaa tagagctgttatgtcctacatcaactccacagagggcggaaatgtccaccaaaccagagaattacctggaatagagaatc cagtatacagcaattcaaaccagaatgtaacgaatctggagcgtgaggttgagcgacaacgtcagagaaggtcccaatgt ccaagtggactaccaccatgtgcagaaagcacgtcaacagactgtaaggtaatgccagaggacaatgccacatgtgctac aaatgttggatatgtggacgatgatgagatggatcgttacacaactatgaaggatttccataacagcctcactgactcaa cgtttgccggaggtgctacaggtggttcagaaaaaggtgtaactaaggacttcctatactataacaataatctgaaagta gacctcgatatggccgcggagaaaaatagtagtccccctcctgactatgataatatatctgttgaatctgtcgactccat agaattagaaaaaaatgacccaccgtatcagactgtgatagataattctaattctgaagtgcttcccagaccctatatct atgatgtgccgaattccaatcagcccgtacagcagtatgtcactatgtcgtcagtggacgtgccacactcgtcctcacag attgatcctcattatgaagaaagtggtaacattagtcaagccggacttgatatcgatgaagaactaaatgacattgctga cacaaacaatgtggaggtaccatacagtaatactcccaatgaatcacatctgtctccaagtgatgtaaacttactgttag acgatatttgtgacgatttagctgaatga |
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Protein
| Protein ID | pfu_aug2.0_445.1_17438.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_445.1_17438.t1 MXIQGNMYLVRVSALVVISITLVSCVESLAAGGPNVCQKIVTRKDTVNKLTQIPYEKCTRTWCPNFWEFFRCTKCYTLYR TGYKQVTVTKYVTEYHCCDGYIQSGNQCVSYCQNGCEQGTCVGPNDCECDPGWRGPDCSSNCSAETWGPYCQSVCDCSGH GQCDINSGHCVCAAGFTGGSCQTKCPHGTYGPNCQLMCKCKNGATCASGNGMCYCAAGFHGAFCELTCDSQGEHCSDQCK CQNNASCETQTGACSCTEGWMGAICTEQCMEGTHGKNCVEKCTCYNNATCDKQSGNCTCTPGYLGSQCEKECPPGRWGQF CSGTCDCKNGGTCDHVTGMCTCVEGYTGADCTTSLCPLWRYGSDCLSVCDCDESTSDSCHPGTGRCNCAPGFSGPICNET CPVPYYGVKCSQVCHCQNGGMCHPVTGECQCRPGFTGDLCNSTCAYGWYGLNCTQECQCENGAYCHAQSGYCSCTEGYKG RQCEEQCNPGTYGFNCSSPCVCLNGAQCHHSNGDCTCMPGYIGDTCNTTCPDYDFGFECSQDCVCKVGNSHGCAPQDGRC LCKEGWYGVDCNSNCADGLWGSDCTRSCDCKNEGSCDQNTGTCICRAGFIGNDCSHSCDQGRYGHRCERDCSQHCPGNLT CHHVTGQCMSLSCPPGRMGITCELACPAGNYGDGCVNKCFCSSGQYCNPEVGCVSVGFQEQVEELKSDQLSSGAVAGIVL AVILVAVIVIMMVIYYKRRVGRLKAENRAVMSYINSTEGGNVHQTRELPGIENPVYSNSNQNVTNLEREVERQRQRRSQC PSGLPPCAESTSTDCKVMPEDNATCATNVGYVDDDEMDRYTTMKDFHNSLTDSTFAGGATGGSEKGVTKDFLYYNNNLKV DLDMAAEKNSSPPPDYDNISVESVDSIELEKNDPPYQTVIDNSNSEVLPRPYIYDVPNSNQPVQQYVTMSSVDVPHSSSQ IDPHYEESGNISQAGLDIDEELNDIADTNNVEVPYSNTPNESHLSPSDVNLLLDDICDDLAE |
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