Gene
| Gene Model ID | pfu_aug2.0_445.1_17440 |
|---|---|
| Locus | scaffold445.1 : 226452 ... 231890 : + |
| To GenomeBrowser | scaffold445.1:226452..231890 |
| Genes list of scaffold | scaffold445.1 |
| Synonym | pfu_aug1.0_21.1_21914 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| matrix metalloproteinase isoform h | GO:0002168 GO:0007155 GO:0007561 GO:0007591 GO:0008233 GO:0030425 GO:0034769 GO:0035001 GO:0035071 GO:0035159 GO:0042246 GO:0046872 GO:0097156 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_445.1_17440.t1 | 2 | 1 | PG_binding_1 | 37 | 88 | 9.5e-10 | 38.3 | 3.1e-12 | 5.0e-09 | 35.9 |
| pfu_aug2.0_445.1_17440.t1 | 2 | 1 | Peptidase_M10 | 118 | 271 | 0.0 | 193.1 | 0.0 | 0.0 | 191.9 |
| pfu_aug2.0_445.1_17440.t1 | 4 | 1 | Hemopexin | 323 | 365 | 0.0 | 173.5 | 6.3e-10 | 1.0e-06 | 28.3 |
| pfu_aug2.0_445.1_17440.t1 | 4 | 2 | Hemopexin | 369 | 411 | 0.0 | 173.5 | 1.2e-13 | 2.0e-10 | 40.2 |
| pfu_aug2.0_445.1_17440.t1 | 2 | 2 | Peptidase_M10 | 407 | 438 | 0.0 | 193.1 | 3.9 | 6500.0 | -3.3 |
| pfu_aug2.0_445.1_17440.t1 | 4 | 3 | Hemopexin | 414 | 457 | 0.0 | 173.5 | 2.3e-19 | 3.9e-16 | 58.5 |
| pfu_aug2.0_445.1_17440.t1 | 4 | 4 | Hemopexin | 460 | 504 | 0.0 | 173.5 | 3.0e-19 | 4.9e-16 | 58.1 |
| pfu_aug2.0_445.1_17440.t1 | 2 | 2 | PG_binding_1 | 536 | 547 | 9.5e-10 | 38.3 | 1.7 | 2900.0 | -1.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_445.1_17440.t1 | gi|676444907|ref|XP_009050582.1| | hypothetical protein LOTGIDRAFT_158923 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_445.1_17440.t1 | gi|158286645|ref|XP_001688107.1| | AGAP006904-PA [Anopheles gambiae str. PEST] | 0.0 |
| pfu_aug2.0_445.1_17440.t1 | gi|391330624|ref|XP_003739756.1| | PREDICTED: matrix metalloproteinase-16-like [Metaseiulus occidentalis] | 0.0 |
| pfu_aug2.0_445.1_17440.t1 | gi|524879509|ref|XP_005096429.1| | PREDICTED: matrix metalloproteinase-24-like [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_445.1_17440.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_445.1_17440.t1 atggatctctctatatttcaactttttgtgagaattacagtattattatggactttgaagtgtgtatctggtcaaaaagt tgtatcacggtcaatctcagacggaatggactacctcatgaaatacgggtatatggccgaggaggacaccaaatctggct ccctccgatcgtatgaccacatcaaagatgctatacgtaacttccaacgttttgcagggctcaagatgacaggaataatg gacaggaaaacgagggaaatgatgagtcgcccgcggtgtggagttaaagatgacattggtaatgccaatagggcgcgtag gaggcgacggcgttatgctttacacggcagcaaatggtccaagaagacaataacttacagagtttccaagtacagcaata agcttgaaaagaaaactacagacaaagaaattcaaagagcttttgatgtttggagtaaggtatcaccattaacattcaga aggatagacaaagggagaccggacattgacattcggtttgaagtaaaatggcacggcgataacaaccctttcgatgggag gggtcaaacattggcacacgcctattttccacggtacggaggcgacactcactttgatgacgacgagccatggaccctca aagttcccagcggtgttaattttttccaagtggccacacatgaattcggtcattcgcttggtttggcccattcagacgtt tatagtgcactcatggctcctttctacaaagggtataccagggattttcgtttgggccgtgacgatattgaagctataca agccctatatggtacgcccgcacaaagaccgactcccaaaccaactaaacctagcagaattattcctttatttacacctc gtccaaaaacaccaagaataatacctcgccgtaaaacaactgagtctcccgtccaagaaacaccggaagtatgccgcgat tccaacattgacgccattacgaaaactcaagatggatccacttatgttttcaaaggtaaaaactactacagactaggtcg ttatggaatagacaagggttaccctagaccaatagaatgggactggaagggagtcaaaggaccaattgacgctgctctta catgggataatggatatacttacattttcaagggagaacattattggaaatatctaaacaaacgcaggatctatggtcca aacaagattacagaaggttttgatggtgttcctggtaacttggacgccgcagttgtatggggaggcaatggcaaaactta ctttttcaaagataatatatattggagatactccggtaggaacgtagattacggctatccaagacctatcagtcgctgga ggggactaccaaagggtattaccgctgctttcagatggaagaatggtagaacttacttctttaccggcaacaagtattac agatacaacgatcaactttttacggtggatgctggttatccccgttctgttgctacgtggtggttaggttgtcccgacca gggtaaatacatagatataaaggatccaagtagccaatcgaacactcatatatcagaaaataatccagatgaacagtgga taacaatagacggtaacactgtgaaagaagccgtgaaggcggtcgggaatagtgcatgcaaaaagacatcttcgtctgta ttgactagtgcagttttaacggtagcctgtactgtgggcagattgctcagcaggtga |
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Protein
| Protein ID | pfu_aug2.0_445.1_17440.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_445.1_17440.t1 MDLSIFQLFVRITVLLWTLKCVSGQKVVSRSISDGMDYLMKYGYMAEEDTKSGSLRSYDHIKDAIRNFQRFAGLKMTGIM DRKTREMMSRPRCGVKDDIGNANRARRRRRRYALHGSKWSKKTITYRVSKYSNKLEKKTTDKEIQRAFDVWSKVSPLTFR RIDKGRPDIDIRFEVKWHGDNNPFDGRGQTLAHAYFPRYGGDTHFDDDEPWTLKVPSGVNFFQVATHEFGHSLGLAHSDV YSALMAPFYKGYTRDFRLGRDDIEAIQALYGTPAQRPTPKPTKPSRIIPLFTPRPKTPRIIPRRKTTESPVQETPEVCRD SNIDAITKTQDGSTYVFKGKNYYRLGRYGIDKGYPRPIEWDWKGVKGPIDAALTWDNGYTYIFKGEHYWKYLNKRRIYGP NKITEGFDGVPGNLDAAVVWGGNGKTYFFKDNIYWRYSGRNVDYGYPRPISRWRGLPKGITAAFRWKNGRTYFFTGNKYY RYNDQLFTVDAGYPRSVATWWLGCPDQGKYIDIKDPSSQSNTHISENNPDEQWITIDGNTVKEAVKAVGNSACKKTSSSV LTSAVLTVACTVGRLLSR |
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