Gene
| Gene Model ID | pfu_aug2.0_445.1_17444 |
|---|---|
| Locus | scaffold445.1 : 307992 ... 318026 : + |
| To GenomeBrowser | scaffold445.1:307992..318026 |
| Genes list of scaffold | scaffold445.1 |
| Synonym | pfu_aug1.0_115.1_07385 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| f-box-like wd repeat-containing protein tbl1x | GO:0000118 GO:0000122 GO:0002021 GO:0003714 GO:0005876 GO:0008013 GO:0016042 GO:0016575 GO:0017053 GO:0030814 GO:0035264 GO:0042393 GO:0043161 GO:0044212 GO:0045944 GO:0047485 GO:0050872 GO:0060070 GO:0060613 GO:0090207 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_445.1_17444.t1 | 4 | 1 | WD40 | 4 | 40 | 1.80067e-42 | 141.7 | 7.6e-17 | 1.4e-13 | 50.1 |
| pfu_aug2.0_445.1_17444.t1 | 2 | 1 | eIF2A | 11 | 66 | 1.6e-07 | 31.2 | 2.2e-05 | 0.04 | 13.6 |
| pfu_aug2.0_445.1_17444.t1 | 2 | 2 | eIF2A | 43 | 146 | 1.6e-07 | 31.2 | 1.0e-07 | 0.00019 | 21.2 |
| pfu_aug2.0_445.1_17444.t1 | 4 | 2 | WD40 | 45 | 91 | 1.80067e-42 | 141.7 | 5.7e-13 | 1.1e-09 | 37.8 |
| pfu_aug2.0_445.1_17444.t1 | 4 | 3 | WD40 | 95 | 133 | 1.80067e-42 | 141.7 | 3.3e-17 | 6.1e-14 | 51.2 |
| pfu_aug2.0_445.1_17444.t1 | 4 | 4 | WD40 | 139 | 169 | 1.80067e-42 | 141.7 | 0.018 | 34.0 | 4.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_445.1_17444.t1 | gi|704275051|ref|XP_010155323.1| | PREDICTED: F-box-like/WD repeat-containing protein TBL1X [Eurypyga helias] | 0.0 |
| pfu_aug2.0_445.1_17444.t1 | gi|759195082|ref|XP_011384272.1| | PREDICTED: F-box-like/WD repeat-containing protein TBL1X [Pteropus vampyrus] | 0.0 |
| pfu_aug2.0_445.1_17444.t1 | gi|193627197|ref|XP_001950365.1| | PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 [Acyrthosiphon pisum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_445.1_17444.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_445.1_17444.t1 atggagcgaccaatgaaaacattccagggacatacgaatgaggtgaatgctatcaagtgggacccacaaggtcagctcct agcttcctgttctgatgatatgactttgaagatatggagtatgagacaagataattgtgtacatgatttacaagcacaca gcaaagaaatctacactatcaaatggagccccacaggacctggtacaaacaatgctaatgtccccttaattctgtccagt gcgtcgtttgattcgacggtaagattgtgggatgtagagcagggtagatgtcttcacacattgaccaagcatcaagagcc ggtatacagtgtggccttcagtccagatggaaaattcttagctagcggctcatttgataaatgtgttcatatttggaatg tccagagtggccaattggtacatagttatagaggcactgggggtatatttgaagtatgttggaatcaccgtggtgataaa gtaggagctagtgcatcagatggctcattttttaacctcttaaactaa |
|
Protein
| Protein ID | pfu_aug2.0_445.1_17444.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_445.1_17444.t1 MERPMKTFQGHTNEVNAIKWDPQGQLLASCSDDMTLKIWSMRQDNCVHDLQAHSKEIYTIKWSPTGPGTNNANVPLILSS ASFDSTVRLWDVEQGRCLHTLTKHQEPVYSVAFSPDGKFLASGSFDKCVHIWNVQSGQLVHSYRGTGGIFEVCWNHRGDK VGASASDGSFFNLLN |
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