Gene
| Gene Model ID | pfu_aug2.0_4452.1_09326 |
|---|---|
| Locus | scaffold4452.1 : 10901 ... 13375 : - |
| To GenomeBrowser | scaffold4452.1:10901..13375 |
| Genes list of scaffold | scaffold4452.1 |
| Synonym | pfu_aug1.0_16812.1_18394 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4452.1_09326.t1 | 3 | 1 | zf-RING_2 | 23 | 69 | 9.4e-10 | 38.1 | 6.3e-13 | 9.4e-10 | 38.1 |
| pfu_aug2.0_4452.1_09326.t1 | 4 | 1 | zf-C3HC4_3 | 23 | 73 | 2.2e-08 | 33.6 | 1.5e-11 | 2.2e-08 | 33.6 |
| pfu_aug2.0_4452.1_09326.t1 | 2 | 1 | zf-RING_UBOX | 24 | 66 | 1.8e-08 | 33.9 | 1.5e-11 | 2.2e-08 | 33.6 |
| pfu_aug2.0_4452.1_09326.t1 | 3 | 1 | zf-C3HC4 | 24 | 68 | 2.1e-08 | 33.7 | 1.4e-11 | 2.1e-08 | 33.7 |
| pfu_aug2.0_4452.1_09326.t1 | 3 | 1 | zf-C3HC4_2 | 24 | 68 | 3.0e-08 | 33.5 | 2.0e-11 | 3.0e-08 | 33.5 |
| pfu_aug2.0_4452.1_09326.t1 | 3 | 1 | zf-C3HC4_4 | 24 | 68 | 4.5e-08 | 32.8 | 3.0e-11 | 4.5e-08 | 32.8 |
| pfu_aug2.0_4452.1_09326.t1 | 4 | 1 | zf-RING_5 | 24 | 70 | 2.2e-07 | 30.4 | 1.5e-10 | 2.2e-07 | 30.4 |
| pfu_aug2.0_4452.1_09326.t1 | 4 | 1 | zf-B_box | 39 | 48 | 6.8e-06 | 25.8 | 5.0 | 7500.0 | -3.1 |
| pfu_aug2.0_4452.1_09326.t1 | 4 | 2 | zf-B_box | 64 | 70 | 6.8e-06 | 25.8 | 2.7 | 4100.0 | -2.3 |
| pfu_aug2.0_4452.1_09326.t1 | 2 | 2 | zf-RING_UBOX | 65 | 71 | 1.8e-08 | 33.9 | 0.16 | 240.0 | 1.5 |
| pfu_aug2.0_4452.1_09326.t1 | 4 | 3 | zf-B_box | 111 | 156 | 6.8e-06 | 25.8 | 1.8e-06 | 0.0026 | 17.6 |
| pfu_aug2.0_4452.1_09326.t1 | 4 | 2 | zf-C3HC4_3 | 113 | 142 | 2.2e-08 | 33.6 | 0.11 | 160.0 | 2.0 |
| pfu_aug2.0_4452.1_09326.t1 | 4 | 2 | zf-RING_5 | 115 | 147 | 2.2e-07 | 30.4 | 0.22 | 320.0 | 1.1 |
| pfu_aug2.0_4452.1_09326.t1 | 3 | 2 | zf-C3HC4_2 | 129 | 140 | 3.0e-08 | 33.5 | 3.4 | 5100.0 | -2.4 |
| pfu_aug2.0_4452.1_09326.t1 | 3 | 2 | zf-C3HC4_4 | 130 | 135 | 4.5e-08 | 32.8 | 7.6 | 11000.0 | -3.7 |
| pfu_aug2.0_4452.1_09326.t1 | 3 | 2 | zf-C3HC4 | 131 | 141 | 2.1e-08 | 33.7 | 10.0 | 15000.0 | -5.0 |
| pfu_aug2.0_4452.1_09326.t1 | 4 | 4 | zf-B_box | 174 | 206 | 6.8e-06 | 25.8 | 5.0e-08 | 7.4e-05 | 22.5 |
| pfu_aug2.0_4452.1_09326.t1 | 3 | 3 | zf-C3HC4_2 | 175 | 206 | 3.0e-08 | 33.5 | 2.4 | 3600.0 | -1.9 |
| pfu_aug2.0_4452.1_09326.t1 | 3 | 2 | zf-RING_2 | 188 | 188 | 9.4e-10 | 38.1 | 10.0 | 15000.0 | -18.2 |
| pfu_aug2.0_4452.1_09326.t1 | 4 | 3 | zf-C3HC4_3 | 194 | 201 | 2.2e-08 | 33.6 | 8.1 | 12000.0 | -4.0 |
| pfu_aug2.0_4452.1_09326.t1 | 3 | 3 | zf-C3HC4_4 | 195 | 199 | 4.5e-08 | 32.8 | 10.0 | 15000.0 | -5.0 |
| pfu_aug2.0_4452.1_09326.t1 | 4 | 3 | zf-RING_5 | 195 | 200 | 2.2e-07 | 30.4 | 2.8 | 4200.0 | -2.5 |
| pfu_aug2.0_4452.1_09326.t1 | 3 | 3 | zf-C3HC4 | 196 | 204 | 2.1e-08 | 33.7 | 10.0 | 15000.0 | -5.2 |
| pfu_aug2.0_4452.1_09326.t1 | 4 | 4 | zf-C3HC4_3 | 425 | 435 | 2.2e-08 | 33.6 | 2.4 | 3600.0 | -2.3 |
| pfu_aug2.0_4452.1_09326.t1 | 4 | 4 | zf-RING_5 | 425 | 435 | 2.2e-07 | 30.4 | 5.9 | 8700.0 | -3.5 |
| pfu_aug2.0_4452.1_09326.t1 | 3 | 3 | zf-RING_2 | 431 | 435 | 9.4e-10 | 38.1 | 7.7 | 11000.0 | -3.8 |
Transcript
| Transcript ID | pfu_aug2.0_4452.1_09326.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4452.1_09326.t1 atggcgacagcaacgccctctgaagatgaaagtgaagaaaaatcttctacaaagagtactcggtacgtctgtcctatttg tctagaatcattgaagactcctcgttctcttccttgtctgcataccttttgtgaagattgtttacaaacttttattactg ctgctgccggtaaaaatcgagacgacgccgcatgtcccgtatgcagaaaacaaattgtggcacccgaaccgggattatct catgaaaaatgggcaaaatcgttcccactcaactattacttgtctacatcttttcagtcgacatattacgcacaatcaga cgtaacaaatgagatggaaaactgtcgattttgcgagaaatctagcaaaagtgtaccagctgaacactattgcaaaaatt gtgcaggggcaatttgtgaagcatgtaaaaacctgcaccaagtctttcctgctttgagtaaccatgccgttttgacttta gaatcttacaaaaagaatcctacgattccagaaatagatgaaatttgtcctctacaccccagtaaagctatagaagttta ctgcttggaccacagtacaatgtgctgcagtgtgtgcttcgctacaaaacatcgtcattgtaaagatgtgaaatccatag aagagtgtgctgaggatttgtcagaagatgttctcaaactcataactacaaagttggagtctttgttggaatcggttgaa gtggaaattaaagaaaaggaaaacataggtgaacaacggaggaaattcaaagaggacacagtggttaagatgacacaatg catagaagctgctaaaaagaaccttgacattctactgcaacagtttgaatctcacatagataggaagaactcttctgctg agtcacagctacaaaatatccttaaaatgttgcaagggatcaaaatatcagctataggagacaggcagatgttagagtct gctaacaagtatggatctaagacacaactctttgttgctttagaaaagatgaaaattcaattgggtgaacagatgaaaca aatatcagatgttgcaaatgtatccctcacaggagcttacacaattgattttgataaagttgaaggaatatgtaacctta aaagtctgagtactgtcgaaacatgtacgtcctctagctctatggtagctttgacaacgcttaatgaactaaatgctata acgaatgctccaattatctttccgggacaacgtcttctcggcattgaaccacgcatgatcaattgggttgaaaaatgtac taatcgtttacaaggtacttgtcctggagcaacatttttaggtagaagaatagctataattgcaaaaggtagaaaggaaa tagtcgtcttgaaggaaaatggtagcattcattttcagcacaagataccgtacagtggagtacctgccgacataaatagc agaggggatgataaaagagtacacatctcatttcgaggggaccggattttgaaaggatattatatagataaaacaacgat aactgaactcgaacagatatcactgcagcacgttgctgaaggattttgcatctttgatgataagatagtacacgcttcaa aagactatgtctacatttctggaacagatggacaactcagacaattaattccaaatgatcagtcgagataa |
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Protein
| Protein ID | pfu_aug2.0_4452.1_09326.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4452.1_09326.t1 MATATPSEDESEEKSSTKSTRYVCPICLESLKTPRSLPCLHTFCEDCLQTFITAAAGKNRDDAACPVCRKQIVAPEPGLS HEKWAKSFPLNYYLSTSFQSTYYAQSDVTNEMENCRFCEKSSKSVPAEHYCKNCAGAICEACKNLHQVFPALSNHAVLTL ESYKKNPTIPEIDEICPLHPSKAIEVYCLDHSTMCCSVCFATKHRHCKDVKSIEECAEDLSEDVLKLITTKLESLLESVE VEIKEKENIGEQRRKFKEDTVVKMTQCIEAAKKNLDILLQQFESHIDRKNSSAESQLQNILKMLQGIKISAIGDRQMLES ANKYGSKTQLFVALEKMKIQLGEQMKQISDVANVSLTGAYTIDFDKVEGICNLKSLSTVETCTSSSSMVALTTLNELNAI TNAPIIFPGQRLLGIEPRMINWVEKCTNRLQGTCPGATFLGRRIAIIAKGRKEIVVLKENGSIHFQHKIPYSGVPADINS RGDDKRVHISFRGDRILKGYYIDKTTITELEQISLQHVAEGFCIFDDKIVHASKDYVYISGTDGQLRQLIPNDQSR |
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