Gene
| Gene Model ID | pfu_aug2.0_4466.1_22564 |
|---|---|
| Locus | scaffold4466.1 : 19706 ... 27855 : - |
| To GenomeBrowser | scaffold4466.1:19706..27855 |
| Genes list of scaffold | scaffold4466.1 |
| Synonym | pfu_aug1.0_11398.1_68331 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4466.1_22564.t1 | 1 | 1 | RVT_1 | 613 | 701 | 7.1e-17 | 61.4 | 5.4e-20 | 1.3e-16 | 60.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4466.1_22564.t1 | gi|554887742|ref|XP_005953369.1| | PREDICTED: uncharacterized protein LOC102308414, partial [Haplochromis burtoni] | 0.0 |
| pfu_aug2.0_4466.1_22564.t1 | gi|658843356|ref|XP_008404066.1| | PREDICTED: uncharacterized protein LOC103462836 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_4466.1_22564.t1 | gi|557028265|ref|XP_006014174.1| | PREDICTED: uncharacterized protein LOC102349546, partial [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4466.1_22564.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4466.1_22564.t1 atgtcagagatgggtgaccaggcggctgcaacttcgttattggcgtttaaaaatgctttggaagaagaacttaaggctag cggaaaggacatcaagaaagaaacaggtgatgatgggtcaaccaagtcagactctaatgttcaatcagtgtcgacgtcaa cagttaaattccacaaggacttcaaaataagtgggcagatagactgtaagtctggtatatcttacaccagtctcattcgt caaatggagctaggtttgaagaagggaaattcagaagcagatgtcattgatggtataattagggcagttatccctacctc cagtttacgcagctaccttgacggacgacaagatttatccttacctgttttgcgaggcagtcttagaggccattatgcag agaaaaatagtactgaactttactcggaactagccagtgcagtacaggatgccaaggaaacaagtagactaagtgaattt ttaatgccatccatggacttgcgcaacaaaatattatttgcatcacaagaaagtagtgacgaacttaaatatnaacaaat tcattgtgcgaaggacaggttgggccttgcattggaggtagataaactgttcatgtcagagatgggtgaccaggcggctg caacttcgttattggcgtttaaaaatgctttggaagaagaacttaaggctagcggaaaggacatcaagaaagaaacaggt gatgatgggtcaaccaagtcagactctaatgttcaatcagtgtcgacgtcaacagttaaattccacaaggacttcaaaat aagtgggcagatagactgtaagtctggtatatcttacaccagtctcattcgtcaaatggagctaggtttgaagaagggaa attcagaagcagatgtcattgatggtataattagggcagttatccctacctccagtttacgcagctaccttgacggacga caagatttatccttacctgttttgcgaggcagtcttagaggccattatgcagagaaaaatagtactgaactttactcgga actagccagtgcagtacaggatgccaaggaaacaagtagactaagtgaatttttaatgccatccatggacttgcgcaaca aaatattatttgcatcacaagaaagtagtgacgaacttaaatatagcccagatcttgtccacaagttatttgcacgaaca gtccagacaggtcttagagacattgttatacggcaagagatgaagcaatttctgtctgaggacaagtcagatgccgaatt gttagataagctgaataaaatcgttcgtcgtgaaaatgaaaacaaacagaaagttggtaagggatctgtttccatggtaa cccgcagtagcacaaactgccaggatgaagtgttagctgaggtaggtcgacgtcagaatgtcaagcttccacaccacagt tcagtaatgattcgtgcgtcactaaagggtcaaaggtatccccggaatattacggctatattcgaaccagcagaaatcaa acgtgaccaaattcatattgaggaaactttggtagaaattggtccgaaaccttgtgtaaagctactcatcacaaataaag gtagttcagacgtcgttattacaaaagggaccttattaggtagcgtgcaccgaatttgttctatcgttgcaacacaggca aatgatccgatagcggaaaccacaccttttacaaatgaccactctataacagaggcagattgggatccacccgtggattt gtcatcaacacctctaaacgcagatcagggttttgtacgtgaagactgtcgtaaatacactgcgtttacaacaccctggg gtcagtatgagtggaacagaattcctttcggacttacgggagctccaggaatatttcaagcttacatgaatgatactctg gaagggcttagagactctttttgtatcccctatctggatgacatattagtttatagcgctagtttcaatgatcatattga acatttgcgtaccgtgttcaaacggctacatgagcgtggactcaaattacgacttagcaaatgtcacctattccaaaaac aagtccgatacctaggacacatgatcactacagaagagcatactgttgaccccgctgataaggaagctgtggattcgctt agacagaaaaggccaagcacgataggcgaagtgagacaacctatgggatttatcggctattaccgaggatatatatcaga gttctcaaggaaggcgaaacctatcaatgatcttttacaggacgattccattccgaagggcaaagctcaaaaggccaagc gtaaaagtaaaggacgtggtcagaagggatctaataccccgaaaaattggactgaagtacaccaacaagtcttagaggaa cttattgattcgcttactatacctcctgtgatggcttaccctaagtatgacaaaccctacataatgcacattgatgcatg tcaaaatggattaggtgcaatcctgtatcaacatcaggactctggtaaacccgcagtcatcgcgtacgggtcaaggacgc ttactccggctgagaaaggatattatatgcactccggaaaactagagtttcttgcattaaaattgagtgtcactgaccgt ttcagagactatttgtattatgcaccatactttgatgaatacagtgactacaatccattacaatatattttcacagcccc gaaaatggacgctactcgattgggatggatgtcttcattggcagacttcaaatttnagaaatcgaagggaggatatgaat acatattggtgaagctatgtggaattagtcgttcaaagacgacaacaccttatcacccacaaggaaatggccaggtaaaa agatttaaccgaagcctacttcagatgttaaggacactacgggaagatgagagactagattggcggaagcatctcaacaa agtcgtccatgcgtacaattgttcaaagcatgaatcaacaggttactcacctttcttcctcttctttgaaagacaccctg ttctaccagtagatctcattttgccacgaaatatagcacctggtgaggaggctcgaaagccttatacgcagtatgtagca gaatggaaggatcgtatggagactccttacaaatatgcttctcagaacgcgaggaaaaacgctcagaaaggcaaacaaca ctatgatgcgaaaggatacggtactattatccttgacaatggtgaccatgtgttagtgcgcaatctccttgaaaagggtg gaccaggtaagctaagaccttactgggaacaggacatttacgttgttgtcaatcgaccgatggaagacttacccgtgtat gatgttcagaagttagatggtcgtggtaaagtccgtcgattatatcgaagtttgttactaccatgcaatagcttacctct tgaacaagacactatcaaaccagtcagaccaaagaaaaagcgaaaaagagctactgtttcgaaaaatctacctttaccag ttgtagaggacagctcctcggattctgatcttaccgtggatatacctgcgtcaaaccttaatccagaggcaagtgaattc gtaccatctagtgaatcttctgttcaggaaatttcccctcccgtggtacaggaaaatgtgcttaccgtttccgaaagctc atcctcgttccagtcagcacaagatgactctaatgatgacgagtccgaactacctgttagtagccaggaggaagaggatg aacatcctgcccaaacagtggatagtaaatcagaaacatctacgcaaggaactcgtcctgcatggaggaggcatcctcct aaggtcctcacgtag |
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Protein
| Protein ID | pfu_aug2.0_4466.1_22564.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4466.1_22564.t1 MSEMGDQAAATSLLAFKNALEEELKASGKDIKKETGDDGSTKSDSNVQSVSTSTVKFHKDFKISGQIDCKSGISYTSLIR QMELGLKKGNSEADVIDGIIRAVIPTSSLRSYLDGRQDLSLPVLRGSLRGHYAEKNSTELYSELASAVQDAKETSRLSEF LMPSMDLRNKILFASQESSDELKYXQIHCAKDRLGLALEVDKLFMSEMGDQAAATSLLAFKNALEEELKASGKDIKKETG DDGSTKSDSNVQSVSTSTVKFHKDFKISGQIDCKSGISYTSLIRQMELGLKKGNSEADVIDGIIRAVIPTSSLRSYLDGR QDLSLPVLRGSLRGHYAEKNSTELYSELASAVQDAKETSRLSEFLMPSMDLRNKILFASQESSDELKYSPDLVHKLFART VQTGLRDIVIRQEMKQFLSEDKSDAELLDKLNKIVRRENENKQKVGKGSVSMVTRSSTNCQDEVLAEVGRRQNVKLPHHS SVMIRASLKGQRYPRNITAIFEPAEIKRDQIHIEETLVEIGPKPCVKLLITNKGSSDVVITKGTLLGSVHRICSIVATQA NDPIAETTPFTNDHSITEADWDPPVDLSSTPLNADQGFVREDCRKYTAFTTPWGQYEWNRIPFGLTGAPGIFQAYMNDTL EGLRDSFCIPYLDDILVYSASFNDHIEHLRTVFKRLHERGLKLRLSKCHLFQKQVRYLGHMITTEEHTVDPADKEAVDSL RQKRPSTIGEVRQPMGFIGYYRGYISEFSRKAKPINDLLQDDSIPKGKAQKAKRKSKGRGQKGSNTPKNWTEVHQQVLEE LIDSLTIPPVMAYPKYDKPYIMHIDACQNGLGAILYQHQDSGKPAVIAYGSRTLTPAEKGYYMHSGKLEFLALKLSVTDR FRDYLYYAPYFDEYSDYNPLQYIFTAPKMDATRLGWMSSLADFKFXKSKGGYEYILVKLCGISRSKTTTPYHPQGNGQVK RFNRSLLQMLRTLREDERLDWRKHLNKVVHAYNCSKHESTGYSPFFLFFERHPVLPVDLILPRNIAPGEEARKPYTQYVA EWKDRMETPYKYASQNARKNAQKGKQHYDAKGYGTIILDNGDHVLVRNLLEKGGPGKLRPYWEQDIYVVVNRPMEDLPVY DVQKLDGRGKVRRLYRSLLLPCNSLPLEQDTIKPVRPKKKRKRATVSKNLPLPVVEDSSSDSDLTVDIPASNLNPEASEF VPSSESSVQEISPPVVQENVLTVSESSSSFQSAQDDSNDDESELPVSSQEEEDEHPAQTVDSKSETSTQGTRPAWRRHPP KVLT |
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