Gene
| Gene Model ID | pfu_aug2.0_447.1_24043 |
|---|---|
| Locus | scaffold447.1 : 231817 ... 235504 : - |
| To GenomeBrowser | scaffold447.1:231817..235504 |
| Genes list of scaffold | scaffold447.1 |
| Synonym | pfu_aug1.0_4497.1_01749 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_447.1_24043.t1 | 1 | 1 | CARD | 15 | 95 | 2.5e-11 | 43.2 | 3.2e-13 | 1.0e-10 | 41.3 |
| pfu_aug2.0_447.1_24043.t1 | 2 | 1 | GAS | 231 | 310 | 1.3e-07 | 31.0 | 2.2e-06 | 0.0007 | 18.8 |
| pfu_aug2.0_447.1_24043.t1 | 2 | 2 | GAS | 358 | 443 | 1.3e-07 | 31.0 | 4.2e-07 | 0.00013 | 21.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_447.1_24043.t1 | gi|658920411|ref|XP_008399935.1| | PREDICTED: death domain-containing protein CRADD [Poecilia reticulata] | 1.0e-10 |
| pfu_aug2.0_447.1_24043.t1 | gi|551522517|ref|XP_005812747.1| | PREDICTED: LOW QUALITY PROTEIN: death domain-containing protein CRADD-like [Xiphophorus maculatus] | 4.0e-10 |
| pfu_aug2.0_447.1_24043.t1 | gi|736200925|ref|XP_010774468.1| | PREDICTED: death domain-containing protein CRADD-like, partial [Notothenia coriiceps] | 8.0e-07 |
| pfu_aug2.0_447.1_24043.t1 | gi|676484322|ref|XP_009063309.1| | hypothetical protein LOTGIDRAFT_235640 [Lottia gigantea] | 3.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_447.1_24043.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_447.1_24043.t1 atgcgtttaccagagacccacatggatccgcgggagaaagctaccttacagaactgtcgtaattgcttcgtggaggacct ggatccgtccatatccttcctgtcagctctcttctgcgcaggcgtaatcactgaggaccagaaggacagaatacataagc aggtcacgagacaagacaaagtcataacactactagatatactacccaggaggggacccagggctttcaaaaagtttgta ggtatactcaagcaggattatgcctggatcagcgagaggctggaggccgagtaccaagtacaagactatatgaagaagat tgataatgctcttgaagaaaggcgaaagaagaacggagagtgtatccgcgacaaggagtacgtaaacagaattattgtag aaactgtaatacccattatgatggaagaaattggtagaccttcgacaagcaacccaagtggggtgggcttcgatcagcca atcagagacatcatcaacgatcacatgatacctattactggcggtaaagacgcacagaaaatgaatttagatttttacca tggtggcatgctgcttgacaagctagtagacttgatagagaatctaaaagaaaacagtttaaagtctctaggtcttttag atttaactgaatttcattcaccacttccgaaattgatagacttcaagctacaggaattgagagatgaaataagctccatg aagaaagaaagtagaaagagtaaaaaaggagaagataaaactacggcagaaaatcaaaaactgaaaaatgactgttcggc actgagaacagaactcaagaaagccagagctgagtataactctgcgaaagttgacattaagaaactgaaggaccaattac agaaaagcagatacgaaaacgaaaaactgaaacaggaaaaaatgaatttagatttttaccatggtggcatgctgcttgac aagctagtagacttgatagagaatctaaaagaaaacagtttaaagtctctaggtcttttagatttaactgaatttcattc accacttccgaaattgatagacttcaagctgcaggaattgagagatgaaataagctccatgaagaaagaaagtagaaaga gtaaaaaaggagaagataaaactacggcagaaaatcaaaaactgaaaaatgactgttcggcattgagaacagaactcaag aaagccagagctgagtataactctgcaaaagttgacatcaagaaactgaaggaccaattacagaaaagcagatacgaaaa cgaaaaactgaaacaggaagtgcaatctcttaaggaccatatgaagaaagcaggaattgatatatctatttcttctgatt ttacatga |
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Protein
| Protein ID | pfu_aug2.0_447.1_24043.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_447.1_24043.t1 MRLPETHMDPREKATLQNCRNCFVEDLDPSISFLSALFCAGVITEDQKDRIHKQVTRQDKVITLLDILPRRGPRAFKKFV GILKQDYAWISERLEAEYQVQDYMKKIDNALEERRKKNGECIRDKEYVNRIIVETVIPIMMEEIGRPSTSNPSGVGFDQP IRDIINDHMIPITGGKDAQKMNLDFYHGGMLLDKLVDLIENLKENSLKSLGLLDLTEFHSPLPKLIDFKLQELRDEISSM KKESRKSKKGEDKTTAENQKLKNDCSALRTELKKARAEYNSAKVDIKKLKDQLQKSRYENEKLKQEKMNLDFYHGGMLLD KLVDLIENLKENSLKSLGLLDLTEFHSPLPKLIDFKLQELRDEISSMKKESRKSKKGEDKTTAENQKLKNDCSALRTELK KARAEYNSAKVDIKKLKDQLQKSRYENEKLKQEVQSLKDHMKKAGIDISISSDFT |
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