Gene
| Gene Model ID | pfu_aug2.0_447.1_24048 |
|---|---|
| Locus | scaffold447.1 : 289933 ... 300764 : - |
| To GenomeBrowser | scaffold447.1:289933..300764 |
| Genes list of scaffold | scaffold447.1 |
| Synonym | pfu_aug1.0_5788.1_31045 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| gamma-tubulin complex component 5 | GO:0000086 GO:0005654 GO:0005813 GO:0005829 GO:0007020 GO:0008017 GO:0008274 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_447.1_24048.t1 | 3 | 1 | Spc97_Spc98 | 16 | 82 | 1.1e-29 | 103.1 | 2.0e-18 | 5.0e-15 | 54.8 |
| pfu_aug2.0_447.1_24048.t1 | 3 | 2 | Spc97_Spc98 | 147 | 216 | 1.1e-29 | 103.1 | 1.6e-18 | 4.1e-15 | 55.1 |
| pfu_aug2.0_447.1_24048.t1 | 3 | 3 | Spc97_Spc98 | 245 | 277 | 1.1e-29 | 103.1 | 0.17 | 420.0 | -1.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_447.1_24048.t1 | gi|584088892|ref|XP_006764087.1| | PREDICTED: gamma-tubulin complex component 5-like, partial [Myotis davidii] | 0.0 |
| pfu_aug2.0_447.1_24048.t1 | gi|514768327|ref|XP_005024908.1| | PREDICTED: gamma-tubulin complex component 5 isoform X2 [Anas platyrhynchos] | 0.0 |
| pfu_aug2.0_447.1_24048.t1 | gi|699605932|ref|XP_009871773.1| | PREDICTED: gamma-tubulin complex component 5, partial [Apaloderma vittatum] | 0.0 |
| pfu_aug2.0_447.1_24048.t1 | gi|564238819|ref|XP_006276270.1| | PREDICTED: gamma-tubulin complex component 5 [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_447.1_24048.t1 | gi|28278558|gb|AAH46182.1| | TUBGCP5 protein [Homo sapiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_447.1_24048.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_447.1_24048.t1 atgtccaccgatgacttctcacttcaccttgatgatgacatgccgcgtgacggtagaattcacagaatgaatattctcag aatgaggctcatctactttgtcaatagtctccacaactatgtcatgacaaggattttacacagtacagggatggaattca aggtagagatagagaaagcccaagacttggatcagatgatcgccattcataataaatacgtcaatacaatctacgagaga tgtctatttcacaggaaggtgtcgtttctgaaggatgctgtgatgggagtcttaaacctggttcttgtgttccagtcact atgggacaaaggcattgatgaaatcagctatacatttgtaccaaaaattacagatctgagcagagagaggattttgttca gcatgtccactgatgacttctcacttcatcttgatgacgacatgccacgtgatggtagaattcacaggatgaacattctc agaatgaggcttatctactttgtcaacagtctccacaactatgtcatgacaaggattttacacagtacagggatggaatt caaggtggagatagagaaagcccaggacttggaccagatgatagccattcataataaatatgtcaacaccatctacgaga gatgtctatttcacaggaaagtgtcatttctgaaggatgctgtgatgggagtcttaaacctggttcttgtcttccagtca ctatgggacaaaggcattgatgaaatcagtctacagtctatagagaacatggaggaggaattcactcggcttatcctgtt tctgtcctcattcctcaacaatatcatctccagaggatcgttcccacatctggagtcccttgcatttgcactcaaaatat ctactgagcatctgatcaagaggtcatga |
|
Protein
| Protein ID | pfu_aug2.0_447.1_24048.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_447.1_24048.t1 MSTDDFSLHLDDDMPRDGRIHRMNILRMRLIYFVNSLHNYVMTRILHSTGMEFKVEIEKAQDLDQMIAIHNKYVNTIYER CLFHRKVSFLKDAVMGVLNLVLVFQSLWDKGIDEISYTFVPKITDLSRERILFSMSTDDFSLHLDDDMPRDGRIHRMNIL RMRLIYFVNSLHNYVMTRILHSTGMEFKVEIEKAQDLDQMIAIHNKYVNTIYERCLFHRKVSFLKDAVMGVLNLVLVFQS LWDKGIDEISLQSIENMEEEFTRLILFLSSFLNNIISRGSFPHLESLAFALKISTEHLIKRS |
|