Gene
| Gene Model ID | pfu_aug2.0_448.1_27408 |
|---|---|
| Locus | scaffold448.1 : 87836 ... 92350 : + |
| To GenomeBrowser | scaffold448.1:87836..92350 |
| Genes list of scaffold | scaffold448.1 |
| Synonym | pfu_aug1.0_1789.1_29865 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_448.1_27408.t1 | 1 | 1 | Helitron_like_N | 339 | 539 | 1.5e-36 | 125.8 | 2.4e-39 | 3.3e-36 | 124.7 |
| pfu_aug2.0_448.1_27408.t1 | 2 | 1 | PIF1 | 780 | 961 | 6.2e-34 | 117.5 | 4.7e-29 | 6.3e-26 | 91.1 |
| pfu_aug2.0_448.1_27408.t1 | 1 | 1 | AAA_30 | 787 | 987 | 2.7e-10 | 40.1 | 5.5e-13 | 7.4e-10 | 38.7 |
| pfu_aug2.0_448.1_27408.t1 | 2 | 2 | PIF1 | 996 | 1090 | 6.2e-34 | 117.5 | 9.9e-09 | 1.3e-05 | 24.3 |
| pfu_aug2.0_448.1_27408.t1 | 1 | 1 | Exo_endo_phos_2 | 1354 | 1455 | 8.7e-08 | 31.8 | 1.5e-10 | 2.0e-07 | 30.6 |
Transcript
| Transcript ID | pfu_aug2.0_448.1_27408.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_448.1_27408.t1 atgttacaaagtcgtgaaaattcagatgtacagctgattatagctaactttcaaagtaaagctaaagaaggaccagaatt tgcttgttcctgttgtaaacggctctgctttgaaaatcaagtagtttcttgctgtttcgaagcatatgctaaaaagggac ataatgtcactaaagctgcaacaatgagtataacacacaactctgaaaattcaacaggggaaggacaagatgattgcttt aaaatatgtcatacatgtcaacgtaaaatcatgactggatgtacaccaccagaatcctcctcaaatcatatgaaccttga caaaataccagacgaattgatatcactaaacagtttagaggaaaacttgattgcaaaacacattacttttatgaagcttg caatgctgccacaagggacacaaaatgctattcaaggaccagttgtctgtgttccttcgaatcttaataaagcagcaagt ttaccaaggcaagaggataatgatctcattctacgagtaaaactgaaacgaaagttaagctacaagggccattacgactt taaatttgtgaatacaagtcatgtgtacaatgcgctgcaatatttgaaggaaaataacatatggtacaaagacacagaca taaatcaaccggacctagaagaaaataattgtatgtcagtatctacatccaatgaacaaaacgatgaaatcagacacaaa gacaatactacaaattgttcaaacattagacctgacaagataccgcacgaggaaaatgagccttcagatgaatatggcgt tcaatatgatacctgcttacaacctccagatataggacaagaagtgcttgaccattactttgatgaagtatataatatag cacctgctgagggaatgaatcctataagaatgcttcaagaaaaagggaatgaagccaagtgttttcctgttctatttccc actggaaaaaattcctatgatgaggcacgaaacctaccaataacccttagcagatactttaataacaggttgatgcatgc agataacagatttgcacaaaatacaaattacctcttctacgcccaatatttatctgaactgaaacaggtaattgataaaa cacaaatttcacttagaaagacagattctaagggaacacctggaggaaacgtaactgcagagacgttacgagacaaggca aaactgaaacagatgttcagaaaagatgaggcactgcgatttctgcagccaataagagggacaccatcctattggcagag tgcacaaaaagatttatttgcgatgctgcgacagcttggaattcctacatggttctgttcattctctgcagctgaattca gatggaaggacatgatcaatgcaatcttaaagcgacaaggagacacaaggaaatttgaaaatcttgaatggtcagacaaa tgccagattcttaaaagcaatcccgtgacagtagcaagaatgttcgaccgtcgttttcacttatttctacatgaagtgat cttgtccccatgcaaccctattggcaaagttgttgactttttcttacgagttgaatttcaacaaaggggatcacctcata tgcactgccttttttggatagcggacgctccaagattgaatgaaaatgacgaggaaacagtatgcgcttttattgataga tatgtcacttgtgaactgcctcacgaaaaggaccaagaactgcatgacatagttcaaggagtacagcagcatagtaagaa gcattcgaagtcatgtcgcaagaaaggaactacatgtcgttttaattttccaagacctccctcctctcgcacatgtatta tttccccattagaggagaaaactagtaatgcaaagaaaaaagactcaaatacgtcgcagttagaagcaagtagtagaaac aatgaagaaaatgactcttatccaaacgaaaccatgacaaaaacagatgcattgggaattctgaagcgagtttgggacgc cattcagtctgactctgttagcnaagctcttgtagaagcacaagaactctatgatttgattggggaaccaacggacgctt gggcaatgatttgtcccgagtcggagagatgccgtgatgaatgtagactgatgaaatcattaaatactgcagatgatggt ttgtcggaagacatttcggatcttcaacctgatcataaaccggatattacatatacaattcaggggcgaaatgcatcgaa ggaagagattctcccggttttaagatctttaaacagtaaacaaagcgaagttttttacttcacaagggattggtgtttga agaaacttcaaggacaaaatgcagatccttttcatatattcatcacgggaggtgctgggactggaaaaagtcatttaatc aaagcaatcaaatatgaagcttcaagaatccttgcaaaagtatgtgaagagccagatcaactaacagttttgttgacagc ttttacggggacagctgcattcaatattcagggttgcactgtccatcatgcatttcgaataactagaggcttaccacttc cttatgaagctctaaaggaacagacacttagtcctcttcgtgctaaattagagaacttacagatacttgttattgacgag gtttccatgatatacaaacgacttctctattacatccacgagcgactagtccagattaagagaaacaaaagtccattcgg tggagtttctgtgttggctgtaggagacttttttcaacttccacccgtgaaacaaagcaagaatgagagattatacaatg tcaatacatcctaccctgtagactactggaacgatttcttctccgttatagagctagatgaaataatgagacagagggaa gacattgaatttgccaaagttctgaacatgatgagaacaagaacagatgatgaacatatttcagatacggcacttgagat gttgcgtgaatgtgaacgggaaggcaaaagcgaagatttgcatgtgttttctacgaataaagaagttgacttgcacaatc aagatatgttaaaatacctacagaaggaaattattgaaatacctgctaaggacttcaaaaaggacaaagcatctggaaaa atgaccccactatctgtacctatatcaaagtcagagtcagatggtctgccaactatccttttgatgtcagaggatgcaag agtaatgcttactagaaacattgatgttcaagacggcctggttaatggaatcatgggaacagttcatcagataaaggaga caaagtctacagaaaagtctaaatcagacatttctgccgtagtagttttatttgataacaaaaaggttggaaagtctgct ggaaaactgtcggagaaaggcaacttggtaacgatagaaagaattgaagaggaattacgaaaatccggaacaaccagatt tcagttccctctcaaattatcctgggcatgtaccgctcataaggtacaagggatgacactcgacagagttgttgttgacc ttaaaaaagtattcagtcctgggcaagcatacgtagccctcagtagggtcacatctaaaggaggtttgcatttgaaaagc agtggcactgtaacgtttgaaaagaagatatttgcagacaaggaagttggagataaaataaaaagtatgaaaaaattctc agtagggaaggttaatctggatgtgagttctggagatctgagtgatcttcgtatgattttgttcaatgtccaaagacttc tctacaatataaagcaaatgaagaccgatcagcggtttcttagtgcagatgctgtaatgcttacagagacatggcttaaa cctgatgatacttgtgatgcagtacaaatagaaagtttcagattttcacatcaatcgagatatgactcctacaccaactc atctgatgtcacatctaagttaaaagagtcatcgggcggtggagttggagtttatattaaagaaacatgtcatttggaga taaaaacgttacatcatacagacatcgaaggtctggttttgaaagctgaggataagctacagatacttgttatttataga ccccaagcatatccaatatcacttttcgtagaacgtctttctgatatcatttcaattttgaacaaaaacaatgaaccgtg tataattctgggagacttcaatgaaaacattcttcaaagcaaaaatggaaaaattcactcgttcatgaccagcagaaact ttaggcaagttgtcacttcacctacaacagtgaatgggacgctgttagaccatgtgtatgttactggcaacattgatgtt actacaaagatcataccaacatattatagcgaccatgaggcagttcttgtcagtattaaattccaaaatgaagttggaaa aatctattaa |
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Protein
| Protein ID | pfu_aug2.0_448.1_27408.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_448.1_27408.t1 MLQSRENSDVQLIIANFQSKAKEGPEFACSCCKRLCFENQVVSCCFEAYAKKGHNVTKAATMSITHNSENSTGEGQDDCF KICHTCQRKIMTGCTPPESSSNHMNLDKIPDELISLNSLEENLIAKHITFMKLAMLPQGTQNAIQGPVVCVPSNLNKAAS LPRQEDNDLILRVKLKRKLSYKGHYDFKFVNTSHVYNALQYLKENNIWYKDTDINQPDLEENNCMSVSTSNEQNDEIRHK DNTTNCSNIRPDKIPHEENEPSDEYGVQYDTCLQPPDIGQEVLDHYFDEVYNIAPAEGMNPIRMLQEKGNEAKCFPVLFP TGKNSYDEARNLPITLSRYFNNRLMHADNRFAQNTNYLFYAQYLSELKQVIDKTQISLRKTDSKGTPGGNVTAETLRDKA KLKQMFRKDEALRFLQPIRGTPSYWQSAQKDLFAMLRQLGIPTWFCSFSAAEFRWKDMINAILKRQGDTRKFENLEWSDK CQILKSNPVTVARMFDRRFHLFLHEVILSPCNPIGKVVDFFLRVEFQQRGSPHMHCLFWIADAPRLNENDEETVCAFIDR YVTCELPHEKDQELHDIVQGVQQHSKKHSKSCRKKGTTCRFNFPRPPSSRTCIISPLEEKTSNAKKKDSNTSQLEASSRN NEENDSYPNETMTKTDALGILKRVWDAIQSDSVSXALVEAQELYDLIGEPTDAWAMICPESERCRDECRLMKSLNTADDG LSEDISDLQPDHKPDITYTIQGRNASKEEILPVLRSLNSKQSEVFYFTRDWCLKKLQGQNADPFHIFITGGAGTGKSHLI KAIKYEASRILAKVCEEPDQLTVLLTAFTGTAAFNIQGCTVHHAFRITRGLPLPYEALKEQTLSPLRAKLENLQILVIDE VSMIYKRLLYYIHERLVQIKRNKSPFGGVSVLAVGDFFQLPPVKQSKNERLYNVNTSYPVDYWNDFFSVIELDEIMRQRE DIEFAKVLNMMRTRTDDEHISDTALEMLRECEREGKSEDLHVFSTNKEVDLHNQDMLKYLQKEIIEIPAKDFKKDKASGK MTPLSVPISKSESDGLPTILLMSEDARVMLTRNIDVQDGLVNGIMGTVHQIKETKSTEKSKSDISAVVVLFDNKKVGKSA GKLSEKGNLVTIERIEEELRKSGTTRFQFPLKLSWACTAHKVQGMTLDRVVVDLKKVFSPGQAYVALSRVTSKGGLHLKS SGTVTFEKKIFADKEVGDKIKSMKKFSVGKVNLDVSSGDLSDLRMILFNVQRLLYNIKQMKTDQRFLSADAVMLTETWLK PDDTCDAVQIESFRFSHQSRYDSYTNSSDVTSKLKESSGGGVGVYIKETCHLEIKTLHHTDIEGLVLKAEDKLQILVIYR PQAYPISLFVERLSDIISILNKNNEPCIILGDFNENILQSKNGKIHSFMTSRNFRQVVTSPTTVNGTLLDHVYVTGNIDV TTKIIPTYYSDHEAVLVSIKFQNEVGKIY |
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