Gene
| Gene Model ID | pfu_aug2.0_448.1_27411 |
|---|---|
| Locus | scaffold448.1 : 134639 ... 140685 : - |
| To GenomeBrowser | scaffold448.1:134639..140685 |
| Genes list of scaffold | scaffold448.1 |
| Synonym | pfu_aug1.0_1685.1_37080 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_448.1_27411.t1 | 3 | 1 | Rad60-SLD | 104 | 159 | 7.1e-07 | 28.8 | 0.0037 | 7.7 | 6.2 |
| pfu_aug2.0_448.1_27411.t1 | 2 | 1 | ubiquitin | 109 | 165 | 9.8e-15 | 53.7 | 2.1e-07 | 0.00044 | 19.5 |
| pfu_aug2.0_448.1_27411.t1 | 2 | 1 | Ubiquitin_2 | 112 | 143 | 1.8e-10 | 40.9 | 3.0e-06 | 0.0064 | 16.7 |
| pfu_aug2.0_448.1_27411.t1 | 3 | 2 | Rad60-SLD | 177 | 243 | 7.1e-07 | 28.8 | 2.5e-07 | 0.00053 | 19.6 |
| pfu_aug2.0_448.1_27411.t1 | 2 | 2 | Ubiquitin_2 | 178 | 221 | 1.8e-10 | 40.9 | 8.1e-08 | 0.00017 | 21.7 |
| pfu_aug2.0_448.1_27411.t1 | 2 | 2 | ubiquitin | 182 | 248 | 9.8e-15 | 53.7 | 1.7e-11 | 3.6e-08 | 32.6 |
| pfu_aug2.0_448.1_27411.t1 | 1 | 1 | TerD | 272 | 422 | 2.0e-09 | 37.0 | 2.0e-12 | 4.3e-09 | 35.9 |
| pfu_aug2.0_448.1_27411.t1 | 3 | 3 | Rad60-SLD | 387 | 406 | 7.1e-07 | 28.8 | 1.1 | 2200.0 | -1.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_448.1_27411.t1 | gi|449483218|ref|XP_004156525.1| | 6.0e-14 | |
| pfu_aug2.0_448.1_27411.t1 | gi|470375883|ref|XP_004333233.1| | ubiquitin domain containing protein [Acanthamoeba castellanii str. Neff] | 4.0e-13 |
| pfu_aug2.0_448.1_27411.t1 | gi|672179357|ref|XP_008809849.1| | PREDICTED: LOW QUALITY PROTEIN: polyubiquitin-like [Phoenix dactylifera] | 2.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_448.1_27411.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_448.1_27411.t1 atgttttgtgagagccctcctggatgtggattggagaaactatcagaggagttccctcccatcaacccatcaccacaatg ttcacattacataccctactgcttaaaatgcacggtcgccttcatagagaaaaatgaaagatgtccatatgacgaatgca gagaaagcgtgtcaaaaacttccaaggagatgcaactgtattacgcaatcctagaatccatgtttggtaaggaggaacat gatgaggacaataatgacgccaaagactccgagattgggcagttcaagtatttaactatcgcaacaataagcagagaaca cgctgatgtagttataaagtacaacgaaagttttacagttataaatctgaaagataaactttattccaagtttggtgagg agcacgctcgacagaaactttactacggtgaaacagaactcgaggtagggtacaaactagttgattacaatattccaaat catggcacggttaccttggatgccggtgaagataatggacgattcaagaacgtaaccataaccacccttcagggagaaag catgaccatcaagtatgatgaacattttacaatcagcaatttaaaagaaaggctgtatgacgaatttggtcaggaacctg tgaaacaaaaattactctttggtgatacagaacttaaggaaggcaatggaaacctagttgattatgaaattccgaaccac gctacgatataccttatcgttcagctgtacggtgttacaggcgccattcatgcagctgtgttcgatctttcgtgggaata tccgaaaggtttcctcaggagacaaggcataaacatccccgtcctcacaaatcgtattgacaggaagcacgtagatgcca gttgttttcttctgtctggagaattcattgaagagatcgtcgatcacaagcacaccaaatccaaatttagccgctgtgtc gttcattcaaagagtatgctaacagacgaccaacgtaaaggacaccagaatattgatgtgagattccaagacattccgga gaacattacatccgttttctttgcccttagtgcaagagacaaaagctctattagcaaattccccaatcccagcctgcaat tctatgaacaaattagaatgaccaatgttttgtgtgaaacaactatcccaactgacacaaaatgtagggcaattatcatg tgctacatgacccgaagcacatctgaggacaacagttgggaaatctacaaatgtggcaagccctcagatggaaatgacag tgattataccaagttacgtgaagatatcaaagacattatacgacaatttacgaaatga |
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Protein
| Protein ID | pfu_aug2.0_448.1_27411.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_448.1_27411.t1 MFCESPPGCGLEKLSEEFPPINPSPQCSHYIPYCLKCTVAFIEKNERCPYDECRESVSKTSKEMQLYYAILESMFGKEEH DEDNNDAKDSEIGQFKYLTIATISREHADVVIKYNESFTVINLKDKLYSKFGEEHARQKLYYGETELEVGYKLVDYNIPN HGTVTLDAGEDNGRFKNVTITTLQGESMTIKYDEHFTISNLKERLYDEFGQEPVKQKLLFGDTELKEGNGNLVDYEIPNH ATIYLIVQLYGVTGAIHAAVFDLSWEYPKGFLRRQGINIPVLTNRIDRKHVDASCFLLSGEFIEEIVDHKHTKSKFSRCV VHSKSMLTDDQRKGHQNIDVRFQDIPENITSVFFALSARDKSSISKFPNPSLQFYEQIRMTNVLCETTIPTDTKCRAIIM CYMTRSTSEDNSWEIYKCGKPSDGNDSDYTKLREDIKDIIRQFTK |
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