Gene
| Gene Model ID | pfu_aug2.0_448.1_27415 |
|---|---|
| Locus | scaffold448.1 : 250757 ... 289971 : - |
| To GenomeBrowser | scaffold448.1:250757..289971 |
| Genes list of scaffold | scaffold448.1 |
| Synonym | pfu_aug1.0_931.1_29496 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_448.1_27415.t1 | 2 | 1 | SH3_9 | 54 | 64 | 1.9e-08 | 33.7 | 2.1 | 4500.0 | -2.7 |
| pfu_aug2.0_448.1_27415.t1 | 2 | 1 | SH3_1 | 55 | 64 | 6.5e-11 | 41.4 | 1.2 | 2500.0 | -2.1 |
| pfu_aug2.0_448.1_27415.t1 | 2 | 1 | SH2 | 58 | 132 | 9.5e-37 | 124.6 | 1.1e-20 | 2.2e-17 | 62.5 |
| pfu_aug2.0_448.1_27415.t1 | 2 | 2 | SH3_1 | 161 | 207 | 6.5e-11 | 41.4 | 1.0e-13 | 2.2e-10 | 39.7 |
| pfu_aug2.0_448.1_27415.t1 | 2 | 2 | SH3_9 | 162 | 205 | 1.9e-08 | 33.7 | 2.6e-11 | 5.5e-08 | 32.2 |
| pfu_aug2.0_448.1_27415.t1 | 2 | 2 | SH2 | 227 | 301 | 9.5e-37 | 124.6 | 9.3e-20 | 2.0e-16 | 59.5 |
| pfu_aug2.0_448.1_27415.t1 | 1 | 1 | PH | 304 | 396 | 4.9e-11 | 42.7 | 5.5e-14 | 1.2e-10 | 41.5 |
| pfu_aug2.0_448.1_27415.t1 | 1 | 1 | C2 | 420 | 497 | 1.4e-10 | 40.8 | 1.6e-13 | 3.3e-10 | 39.6 |
| pfu_aug2.0_448.1_27415.t1 | 1 | 1 | RasGAP | 594 | 765 | 4.4e-38 | 130.9 | 3.50002e-41 | 7.5e-38 | 130.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_448.1_27415.t1 | gi|524893296|ref|XP_005103165.1| | PREDICTED: ras GTPase-activating protein 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_448.1_27415.t1 | gi|746872715|ref|XP_011067635.1| | PREDICTED: ras GTPase-activating protein 1 [Acromyrmex echinatior] | 0.0 |
| pfu_aug2.0_448.1_27415.t1 | gi|759078876|ref|XP_011349235.1| | PREDICTED: ras GTPase-activating protein 1 [Cerapachys biroi] | 0.0 |
| pfu_aug2.0_448.1_27415.t1 | gi|193606011|ref|XP_001942745.1| | PREDICTED: ras GTPase-activating protein 1 [Acyrthosiphon pisum] | 0.0 |
| pfu_aug2.0_448.1_27415.t1 | gi|665801933|ref|XP_008549000.1| | PREDICTED: ras GTPase-activating protein 1 [Microplitis demolitor] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_448.1_27415.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_448.1_27415.t1 atggctgacaccaacaactctgcagctgcatcaagttctttatgccctgggacagacgataccggggggacagatgcagg ggacgatgaagatcccttgtcagaaaaccaggacgcagttgaggagacattgttcatagacataggaaaaacagcgccac cggaagataactggtatcatggacgcctcggcagacagccagcggaggatagattgcggacagcaggggagataggtagc tacctagtaagggaaagtgagagaaataaaggttcctacgtcctgtcctacctggggaagaatggactcaaccattttaa gatatcagcaatatgcggagactactacattgggggtcggcgtttcgacagcctgtctttgttaataggttattatacat cgtgttcctatctgctgaaaggagagcaactcaagtttcccgtttctcctccagagcctgtggatgataggcgtaaagtt gtagctgtatatcctttttcgaaaatgccagagacagatgaattaagttttgataaaggtgacatttttattgtcctgaa tgagatgggtgatggctggctgtgggccaagtcccagagaacaggagaggagggtcaaatacatgaagccttagtggacg atatgaatgaaaatgttgatcctgttcacagtctcccatacttccatgcagacattaccaaggagatcgctgtggaaaaa ttgcgagactctggtcagggaagttaccttgtcagaccgagtgataactccccgggtgattactccttgtatgtcctctg tgataagacggtgcagcgatttcgcattgaaaaacacaacaaacagttatacatgatgggcggtagatactttgacagtg tggatggaataatagagagatataaaaaggaagagatagtggcaggtacaaaaactaaaaagtggaaaaacatgtatttc gtactccttggtaatgataggcagttgtgttttttagaaaatgaaaaaaggtctcgtccaaagggtatgattgacatgag ttttagttccctttatccagtccatgacagcttctttgggaggccaaactgttttcaactgattacaaatgcatataacc actttcaaatttattatttgtgtgctgagaatggtgaccttgcacagaaatggcttcaggctttgaagccctactgtgta aacacaacaccagtacgcactcaacagagatcgtctgtcttgaaagaattacgcactctaacagtagaggttgtcgatgc tcgtcaattactagtcagggttttaccccatccttattgtgttgtctcattaaatcaggttaaagtgtgtagaacccaag tggcagagggttctaacccagtctgggaagaaaagtttatcatagatgatgtgccatgtgatatagaggcctttagcatt agcatatacaatcattctaaaaggacagtagatagagaaatagctcaagtgactgtgccatttgaagatttaaagaatgt ggactgttatgacaagtggagccccttacatcctgttagtcaaggtgtacgtggggagcagggctcactgagaatcaggg ctcggtacctgcatgaaattattatgccagaagataaatactcgacacttaaggagttgttattgaatggtgatctcagc aatattttagaactgtttacaatatgtggtgcagacagaattcctttggcaaagtcattattacagatatttaggcatga gaagcaagaaaaagtcatcttaaagacaatgaatgatttagaaatagctagagaggatgaagtttcaacattatttagag ctacttctctggctacaacactaatggaccaatatatgaagatgactgcctcccagtttgtcagtatggccgtcaaaggc tgcatcgtcagaatactggatagtaaactttcttgtgagttgaatcctgcgttattagacggttcagacgctggtcctaa cagggaccattttctgtactttcttatagaaatgacagagtccattttcaaatcaacaaaaagttgtccaggagtattac ggtatatatgcggttgtctacagaggagtgctgcggctaagtggcctcaggatgagagtgtgcgtacaagagtagtcagt ggttttatatttcttcgtttattatgtcctgcaattctcaaccccaaatctttcaatttaataactgaagccccatcaga gactgccagtagaactttgaagttaatagccaaagctttacaaaacctagcaaatctggtggagtttggtgcaaaggagt ccttcatggaagttatcaatccatttatagtgcaaaataaaccaaggatgatccagttcttggacaggttgtcggatata agcgacaatgaaacagaaagtgatgaacatgctccacctattgatgatctggcccgagaactagctactatccaccagat atgtgcctcccacctcatggaactcaggaaattatcagaatcaaagccatcgttgaagaagttgaatgaatttgacagca agcaagcatatatgtattaa |
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Protein
| Protein ID | pfu_aug2.0_448.1_27415.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_448.1_27415.t1 MADTNNSAAASSSLCPGTDDTGGTDAGDDEDPLSENQDAVEETLFIDIGKTAPPEDNWYHGRLGRQPAEDRLRTAGEIGS YLVRESERNKGSYVLSYLGKNGLNHFKISAICGDYYIGGRRFDSLSLLIGYYTSCSYLLKGEQLKFPVSPPEPVDDRRKV VAVYPFSKMPETDELSFDKGDIFIVLNEMGDGWLWAKSQRTGEEGQIHEALVDDMNENVDPVHSLPYFHADITKEIAVEK LRDSGQGSYLVRPSDNSPGDYSLYVLCDKTVQRFRIEKHNKQLYMMGGRYFDSVDGIIERYKKEEIVAGTKTKKWKNMYF VLLGNDRQLCFLENEKRSRPKGMIDMSFSSLYPVHDSFFGRPNCFQLITNAYNHFQIYYLCAENGDLAQKWLQALKPYCV NTTPVRTQQRSSVLKELRTLTVEVVDARQLLVRVLPHPYCVVSLNQVKVCRTQVAEGSNPVWEEKFIIDDVPCDIEAFSI SIYNHSKRTVDREIAQVTVPFEDLKNVDCYDKWSPLHPVSQGVRGEQGSLRIRARYLHEIIMPEDKYSTLKELLLNGDLS NILELFTICGADRIPLAKSLLQIFRHEKQEKVILKTMNDLEIAREDEVSTLFRATSLATTLMDQYMKMTASQFVSMAVKG CIVRILDSKLSCELNPALLDGSDAGPNRDHFLYFLIEMTESIFKSTKSCPGVLRYICGCLQRSAAAKWPQDESVRTRVVS GFIFLRLLCPAILNPKSFNLITEAPSETASRTLKLIAKALQNLANLVEFGAKESFMEVINPFIVQNKPRMIQFLDRLSDI SDNETESDEHAPPIDDLARELATIHQICASHLMELRKLSESKPSLKKLNEFDSKQAYMY |
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