Gene
| Gene Model ID | pfu_aug2.0_448.1_27417 |
|---|---|
| Locus | scaffold448.1 : 305938 ... 313701 : - |
| To GenomeBrowser | scaffold448.1:305938..313701 |
| Genes list of scaffold | scaffold448.1 |
| Synonym | pfu_aug1.0_13898.1_10658 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_448.1_27417.t1 | 3 | 1 | RRM_6 | 87 | 98 | 8.3e-17 | 60.9 | 2.2 | 11000.0 | -3.5 |
| pfu_aug2.0_448.1_27417.t1 | 2 | 1 | RRM_1 | 210 | 259 | 1.9e-18 | 65.8 | 3.9e-13 | 1.9e-09 | 36.9 |
| pfu_aug2.0_448.1_27417.t1 | 3 | 2 | RRM_6 | 210 | 259 | 8.3e-17 | 60.9 | 1.7e-12 | 8.4e-09 | 35.2 |
| pfu_aug2.0_448.1_27417.t1 | 2 | 1 | RRM_5 | 210 | 258 | 3.6e-08 | 33.1 | 5.7e-08 | 0.00028 | 20.6 |
| pfu_aug2.0_448.1_27417.t1 | 2 | 2 | RRM_1 | 294 | 333 | 1.9e-18 | 65.8 | 6.9e-10 | 3.4e-06 | 26.5 |
| pfu_aug2.0_448.1_27417.t1 | 3 | 3 | RRM_6 | 294 | 334 | 8.3e-17 | 60.9 | 1.2e-08 | 5.9e-05 | 22.9 |
| pfu_aug2.0_448.1_27417.t1 | 2 | 2 | RRM_5 | 307 | 326 | 3.6e-08 | 33.1 | 0.00011 | 0.57 | 10.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_448.1_27417.t1 | gi|675851360|ref|XP_009011240.1| | hypothetical protein HELRODRAFT_132012, partial [Helobdella robusta] | 8.0e-34 |
| pfu_aug2.0_448.1_27417.t1 | gi|162462398|ref|NP_001104824.1| | hnRNPA/B-like 28 [Bombyx mori] | 2.0e-31 |
| pfu_aug2.0_448.1_27417.t1 | gi|222101818|gb|ACM44033.1| | hnRNPA/B-like 28 [Bombyx mori] | 3.0e-31 |
| pfu_aug2.0_448.1_27417.t1 | gi|557772488|ref|XP_005185900.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein 27C [Musca domestica] | 1.0e-30 |
| pfu_aug2.0_448.1_27417.t1 | gi|195156455|ref|XP_002019115.1| | GL26194 [Drosophila persimilis] | 2.0e-30 |
Transcript
| Transcript ID | pfu_aug2.0_448.1_27417.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_448.1_27417.t1 atgcccgaaccctttgttcgaacaatggttgaaagagtggagagaggatgctgctgcaaaaaatctgaaaactcaatatg tctatggaaaggtggatctactaactcttctacgtactatatcaatgcattatatgatgtttattttaggaaaactccag cactcaaatccctgcagaagtacccactgccactaccgtcaggaaaagactgcaagatgctggaaaattttggtgacaag atgtgtaaaatgcttgatgacagattacagaagcatatagcccagtatggttcagcaacgccagtagccaatgagagcag cgatgacagtgatgatgtcattccgagttgtttacctcgtgttccgcagccaagatctacttcacgtcccacaaatccat ccaatcagagagtggcaatagacatcagtgatagcgattctgacacggccagtagtaatagacaaccagacttgcaacca aagaagaagaggcagagatcgggttcttcaggtagagggagggagtatataccggcttacaggtctggtccatatgcaat ccttattacactatacaggaatcaacagaaagctgtttattggaggtttaagctgggataccaatcaagtcagtatggag aggtaattgactgtgttgtgatgaagaatcagcaaacgggaaagtctcgtggttttggatttgttacatttaaggatcct caatgtgtaggaacggtactgtcaatgcctgctcatatactagatggaagacaggtagatgcaaaggcatgtaatcctaa aggactgaacagggcaataggctctcagaataaccgaggaggagggaggggtgataacgatccatacagagactttaaaa tcttcatgggaggacttcctaatgtggatgaagatttccttaaaaacttctttggcagatatggaaaggttgtggaggtt aacattatgaaagatcccagtaataaaaaatccagaggtaagttgcatgaagctacagttaagatgatacaaaatgattt ttaa |
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Protein
| Protein ID | pfu_aug2.0_448.1_27417.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_448.1_27417.t1 MPEPFVRTMVERVERGCCCKKSENSICLWKGGSTNSSTYYINALYDVYFRKTPALKSLQKYPLPLPSGKDCKMLENFGDK MCKMLDDRLQKHIAQYGSATPVANESSDDSDDVIPSCLPRVPQPRSTSRPTNPSNQRVAIDISDSDSDTASSNRQPDLQP KKKRQRSGSSGRGREYIPAYRSGPYAILITLYRNQQKAVYWRFKLGYQSSQYGEVIDCVVMKNQQTGKSRGFGFVTFKDP QCVGTVLSMPAHILDGRQVDAKACNPKGLNRAIGSQNNRGGGRGDNDPYRDFKIFMGGLPNVDEDFLKNFFGRYGKVVEV NIMKDPSNKKSRGKLHEATVKMIQNDF |
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