Gene
| Gene Model ID | pfu_aug2.0_450.1_00760 |
|---|---|
| Locus | scaffold450.1 : 248396 ... 261910 : - |
| To GenomeBrowser | scaffold450.1:248396..261910 |
| Genes list of scaffold | scaffold450.1 |
| Synonym | pfu_aug1.0_7718.1_45717 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_450.1_00760.t1 | 1 | 1 | zf-C4 | 394 | 469 | 9.0e-23 | 80.2 | 4.5e-26 | 2.2e-22 | 79.0 |
| pfu_aug2.0_450.1_00760.t1 | 1 | 1 | Hormone_recep | 586 | 747 | 5.3e-18 | 64.8 | 2.2e-21 | 1.1e-17 | 63.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_450.1_00760.t1 | gi|524908236|ref|XP_005109222.1| | PREDICTED: uncharacterized protein LOC101848845 [Aplysia californica] | 6.0e-39 |
| pfu_aug2.0_450.1_00760.t1 | gi|72054366|ref|XP_797496.1| | PREDICTED: nuclear receptor ROR-beta [Strongylocentrotus purpuratus] | 9.0e-38 |
| pfu_aug2.0_450.1_00760.t1 | gi|524915597|ref|XP_005112592.1| | PREDICTED: retinoic acid receptor beta-like [Aplysia californica] | 6.0e-33 |
| pfu_aug2.0_450.1_00760.t1 | gi|507616849|ref|XP_004623887.1| | PREDICTED: bile acid receptor isoform X1 [Octodon degus] | 3.0e-32 |
| pfu_aug2.0_450.1_00760.t1 | gi|507616853|ref|XP_004623889.1| | PREDICTED: bile acid receptor isoform X3 [Octodon degus] | 4.0e-32 |
Transcript
| Transcript ID | pfu_aug2.0_450.1_00760.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_450.1_00760.t1 atggattcagagaaatctacagagagttcagttgccacacctaacaagtgtacacaaggagagggtgtggccacaaagtg tgatggtgatggagaagttgtcctagatgccgtgatgtgtcagggtacgggaatacacgataaagatgttaaatcgtatg aggagatagcaaagtgtgtagatggcccctgtcaccaacctgggacagaacagggctcagatgtaccatgtcagagtgaa ggaacattgagtactaccatatatgaggctgggaaagtagacagcacatgtcaaaatggaggaaccatgcccgtatgtac caccatacttgagaatggaaaagataatgttgtagacaccatatgccagactgatggaaccataaacaccatggtatacc agactgggagagaaccaggcatagacatcacatgtcaaagtgaggtgcatatagaacaggaagtaccgtcatgtcataac gctggacttcaggatgtcgctgcgacatatcagattcgtagtatccaagaggagaagcaatcttcagaagattcagagag aagacttatatcccagatacagagtatacaagaagatattataaccatagagaagctaaaaacatcaggaaaacaactcg actgttcacagactttatccaaatactttgatgaccaatcagttgtggatatcagagtagtcaattcagaagctgagcct aactgtagagatgtgggtgatgaatatatcatagaagtagaaaacatggacaccagtaacaatcaggagtctgtgcttgt acaacgcattgaaacagccacacctgacttccagctccatcgggagaaagtcatagaggctatagggccagagtttcgta ttaaaactgatcagccagaaaatccagcagttatggatgcgttggaagctttgttacagctagagcaaataaatcgggtc gaccattcagaggttgttaataccatggaggtccagacttcctctgactttgctgattctccgtcccaggaagaggaata tcgttctgaggatctcagtatgagcagtagttgtatgagtccaagctctgtatcagctaccggtgatctacctatcacgt ctgtacagaacctccttcagaggaaagccagcagacctacaaagagtgccttcctacctccatgtagagtgtgctctgat cctgctacgggattccactatggtgttaactcatgtgaagcttgtaagggcttttttcgacggagcattgtgaaaatcca acagaagaaccagacgtacagatgtaaacgtggtcctgagaaagatggattctgtatactaggtccagggaagaggaact cgtgtgccgcttgtagatataagaaatgtttagctacgggcatggctgtagaagccatcaagactggtcgatatacatat gaaaaacgcacaaaagacacagtagaggtacggaagcttctatctaaggatgctgatgaagagtatatgagtagcgcaga gttagatggtctactggatgtactgagggatgtccagcttaggaattgtccagaggccaaacttttactggacgaagaat ttgtcaaacagaggcagcaaaaggcttataatgattaccaggcaaagattgagacattcggctcactttccatcgtccca caagatgtctggaatgaatttttcaacaacacagggattgatttggacaatcgactggaattcatcaagtctcgtcttga gaggatggaactggagttaacaaagatggtagattttgtgcggtccattcctatgttcacagaactctccgtatcagatc agacggcccttataaagtcatcccattttgaattctggttccttgctgcacacaagtgtataaatccaagtctacgagtt gttgttggcgtaagggactttcatgaagcggagataaagggaatcgtacgcaaagattttacagaaaatttattctcagt ggccaagtctcttcttgcactgaatttaacatgggaggagattacagtagtgagaggaattgttgtcacttttacagaca gatgtgaattggaggaacctgagaaggtagagaggatccagtctaggttgatctcggctttaaggattctggccaagaga aataaacaggatcccgataaacgaatttgtaaaatagtagatagactgacggcactgaggaatatgacggaattgactca cgatattcacaaagatatcttgacatggcccctcatgaaggactaccctctggctttagatgttttgcaaggtgctagct aa |
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Protein
| Protein ID | pfu_aug2.0_450.1_00760.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_450.1_00760.t1 MDSEKSTESSVATPNKCTQGEGVATKCDGDGEVVLDAVMCQGTGIHDKDVKSYEEIAKCVDGPCHQPGTEQGSDVPCQSE GTLSTTIYEAGKVDSTCQNGGTMPVCTTILENGKDNVVDTICQTDGTINTMVYQTGREPGIDITCQSEVHIEQEVPSCHN AGLQDVAATYQIRSIQEEKQSSEDSERRLISQIQSIQEDIITIEKLKTSGKQLDCSQTLSKYFDDQSVVDIRVVNSEAEP NCRDVGDEYIIEVENMDTSNNQESVLVQRIETATPDFQLHREKVIEAIGPEFRIKTDQPENPAVMDALEALLQLEQINRV DHSEVVNTMEVQTSSDFADSPSQEEEYRSEDLSMSSSCMSPSSVSATGDLPITSVQNLLQRKASRPTKSAFLPPCRVCSD PATGFHYGVNSCEACKGFFRRSIVKIQQKNQTYRCKRGPEKDGFCILGPGKRNSCAACRYKKCLATGMAVEAIKTGRYTY EKRTKDTVEVRKLLSKDADEEYMSSAELDGLLDVLRDVQLRNCPEAKLLLDEEFVKQRQQKAYNDYQAKIETFGSLSIVP QDVWNEFFNNTGIDLDNRLEFIKSRLERMELELTKMVDFVRSIPMFTELSVSDQTALIKSSHFEFWFLAAHKCINPSLRV VVGVRDFHEAEIKGIVRKDFTENLFSVAKSLLALNLTWEEITVVRGIVVTFTDRCELEEPEKVERIQSRLISALRILAKR NKQDPDKRICKIVDRLTALRNMTELTHDIHKDILTWPLMKDYPLALDVLQGAS |
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