Gene
| Gene Model ID | pfu_aug2.0_452.1_07544 |
|---|---|
| Locus | scaffold452.1 : 223450 ... 237153 : - |
| To GenomeBrowser | scaffold452.1:223450..237153 |
| Genes list of scaffold | scaffold452.1 |
| Synonym | pfu_aug1.0_33345.1_12144 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| serine--trna cytoplasmic | GO:0004828 GO:0005524 GO:0005737 GO:0006434 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_452.1_07544.t1 | 4 | 1 | Seryl_tRNA_N | 34 | 124 | 2.5e-14 | 53.1 | 5.2e-18 | 2.5e-14 | 53.1 |
| pfu_aug2.0_452.1_07544.t1 | 4 | 2 | Seryl_tRNA_N | 137 | 172 | 2.5e-14 | 53.1 | 0.11 | 540.0 | 0.6 |
| pfu_aug2.0_452.1_07544.t1 | 1 | 1 | tRNA-synt_2b | 236 | 416 | 1.2e-33 | 116.1 | 4.0e-37 | 2.0e-33 | 115.4 |
| pfu_aug2.0_452.1_07544.t1 | 4 | 3 | Seryl_tRNA_N | 262 | 296 | 2.5e-14 | 53.1 | 0.031 | 150.0 | 2.3 |
| pfu_aug2.0_452.1_07544.t1 | 4 | 4 | Seryl_tRNA_N | 567 | 584 | 2.5e-14 | 53.1 | 1.1 | 5400.0 | -2.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_452.1_07544.t1 | gi|524887580|ref|XP_005100374.1| | PREDICTED: serine--tRNA ligase, cytoplasmic-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_452.1_07544.t1 | gi|676463929|ref|XP_009056759.1| | hypothetical protein LOTGIDRAFT_190601 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_452.1_07544.t1 | gi|91086675|ref|XP_968460.1| | PREDICTED: serine--tRNA ligase, cytoplasmic [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_452.1_07544.t1 | gi|557782219|ref|XP_005190724.1| | PREDICTED: serine--tRNA ligase, cytoplasmic [Musca domestica] | 0.0 |
| pfu_aug2.0_452.1_07544.t1 | gi|157108382|ref|XP_001650201.1| | AAEL005037-PA [Aedes aegypti] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_452.1_07544.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_452.1_07544.t1 atgttgttgctaccaaagcaagattatggaagtaaggcaacaaacagctctgtttaccggcagctccgatacgtttttgc cctaaacacaaggaaaatggtgttagatattgaactttttcgttcggacaaaggcggagatcctgctaaaataagagaaa accagtcaaagcgatttaaagatgtcacacttgtggataaagtggtcgaaaacgacaccgaatggcgaaaaaagagatac agagcagatctcctgaacaagcaaataggagtttgtagtaaagtcattggtgagaaaatgaaggccaaagaaccacaagg agaggataagactgttcctgaaaacatcacaacaaatatagaaggatttactaaagaggacattcagtccttggcagtcg tgcaaatcaaagagctgaaatccctgatagaacagcaaaaagttcagaatgctgccgacctggtcaaacatgaaacagac aggaatgaagctctgaaggaagtggctaacttaacacacgagacgtgtataatcagtaacgatgaggatgaaaatggtgt agaaaggacgtatggggactgtgaatctcgtaagaaatactcacacgtagacctggtggtgatggttgatggagttgacc ttgaccgtgggtcggtgactgctggaggtcgtgggtattacttaaagggcccattggttttcatggaacaggctttaatt aatctggcaatgaagatgttacatgacaggagttttgtccccttatatacaccattttttatgagaaaagaagtgatgca ggaagtcgctcagctctcacagtttgatgaagaattgtacaaggtgataggtaaaggaagtgagaagggagatgacagta ccctggatgagaagtacctgatagccacgtcagaacagccaattgctgcttaccatagggacgaatggatacccactgaa tcactaccaatcaaatatctaggttactctacatgcttcagacaagaggttggctcacatggacgagatacaagaggcat cttcagggtccatcagtttgaaaaggtagaacaatttgtactgacatcaccgtttgaaaacaagtcatgggaaatgtttg atgagatgataaaaaatgcagaggactttaatcagctccttggaatcccttatagaattgtcaatattgtctcaggtgca ctgaacaatgctgcggccaagaagcttgaccttgaggcgtggttcccaggatcaggggcattcagagagcttgtatcgtg ttcaaattgtctagactatcaggcacggcgacttaaagtcagatatggtcaaacaaagaaaatgaaccaggaggcagatt atgtacacatgctgaatgccaccatgtgtgccacgaccagaacgatatgtgccatactagaaaactaccaagaagaagat ggaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnttgtggttcctgaacctttacgcatgtatatgccaagaggatttgaagaaaaaattccatttgttaaaccagcacca atagatcaagaggaaaccaagaaacagaagaaacataaagaacagcaaaaaaagaaagacaaaaatgtgactgatggtgt acagaatatgaatatagataaatga |
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Protein
| Protein ID | pfu_aug2.0_452.1_07544.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_452.1_07544.t1 MLLLPKQDYGSKATNSSVYRQLRYVFALNTRKMVLDIELFRSDKGGDPAKIRENQSKRFKDVTLVDKVVENDTEWRKKRY RADLLNKQIGVCSKVIGEKMKAKEPQGEDKTVPENITTNIEGFTKEDIQSLAVVQIKELKSLIEQQKVQNAADLVKHETD RNEALKEVANLTHETCIISNDEDENGVERTYGDCESRKKYSHVDLVVMVDGVDLDRGSVTAGGRGYYLKGPLVFMEQALI NLAMKMLHDRSFVPLYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKGDDSTLDEKYLIATSEQPIAAYHRDEWIPTE SLPIKYLGYSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPFENKSWEMFDEMIKNAEDFNQLLGIPYRIVNIVSGA LNNAAAKKLDLEAWFPGSGAFRELVSCSNCLDYQARRLKVRYGQTKKMNQEADYVHMLNATMCATTRTICAILENYQEED GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPEPLRMYMPRGFEEKIPFVKPAP IDQEETKKQKKHKEQQKKKDKNVTDGVQNMNIDK |
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