Gene
| Gene Model ID | pfu_aug2.0_453.1_10794 |
|---|---|
| Locus | scaffold453.1 : 92036 ... 119345 : + |
| To GenomeBrowser | scaffold453.1:92036..119345 |
| Genes list of scaffold | scaffold453.1 |
| Synonym | pfu_aug1.0_590.1_00406 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase rnf123-like | GO:0005737 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_453.1_10794.t1 | 3 | 1 | zf-C3HC4_3 | 595 | 598 | 2.0e-10 | 40.1 | 7.0 | 15000.0 | -4.4 |
| pfu_aug2.0_453.1_10794.t1 | 3 | 2 | zf-C3HC4_3 | 740 | 746 | 2.0e-10 | 40.1 | 1.9 | 4100.0 | -2.5 |
| pfu_aug2.0_453.1_10794.t1 | 3 | 3 | zf-C3HC4_3 | 927 | 974 | 2.0e-10 | 40.1 | 9.5e-14 | 2.0e-10 | 40.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_453.1_10794.t1 | gi|350401972|ref|XP_003486321.1| | 0.0 | |
| pfu_aug2.0_453.1_10794.t1 | gi|380017115|ref|XP_003692509.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_453.1_10794.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_453.1_10794.t1 atgtatattatccttgaccatgataagtatccgatcgatggataccagttacttcagcacgtccccagagaagatgtggt gagatcacaggtgttactaggatgtatagagaggttattacctgtccttatagagcaagaggaaaaatctgaagaagccc gtttaatagcgcagaaggaagaagaacctcctcctctaggtgactgccgtagtgagaaggccacctcactcctcattgct gcccacctctttgaaaacctggctcctatattgaaaagtgcctacgtagtggagtgttgcttagtgccattactactaaa gttctgtaacacatcaactgatctacacatacctctcccacatataacattcttcctagatctggcatggtccttaatgc aggagcatgagatcaagccgtgcatggagaatctcattacgaccttactgtactcgttctacaagacagctccggacact tccaacttctctccactgaggacgtacctactccttaccctgaggattctacagcatcaacaaaccaggaggttcctact caccaatatattatttgataagataaagtttccggtgtttatgcatgtaaagccacctgacgatgccggcttagccactt taatgccggaagttttctgggcaacactagacaacgatcctgatattaccctacctgccatgactgataaagatcaccaa aaaaagaaagtcttcctcgatgcctgtgatcgtctcagagctaaagtagaagagctagaggacttacagatagagatact taagcttcttttgattaattctgatatcattgagggaaagacttcaagattgatattttgtgaaaaatttaggacttatc taaagaataatgtaagattaggaaggattacccaggtgaccacctgtccgttaagttttcttcaccgactcgtacgagct gtgcagttttactgggacgactttcagaaagaagatcctgacagatttgtcttcagttctgaggcgtaccttccaataca cgaattctggtcagacacctatgactcgatggatctacagagatgtgggggacttgtatcacaccttaacagaatgctcg gtagtgaggttaataaagcacaaggttttcaactgacaaaagagggtagtgtttttaaagttcaaagtcctcagaaaccc agtgactacccagccttggaaatgcctagtggaaactccctgatgacattgttagacatggttcttttactgtatcatct atcatctcacacacagctatctaaaatgtgttccatcagagacagccttaaggagtttgtgacgggattacatgacacgg aggctaagctgaagatctgccctgccgacaactccgacatcaggaaggaactcgcacatgctagggacgtgttaaacatc aagtacgaggaccttgctcggcagattggctggcttatagctgtagtctactcacagagaaaacaagaggatgttgcgtg gatattgagggttacaatgcggacagtagagaaggcatccatgttccaccttctcttccagtacctccctgaattctaca tcgaaaatgtcatcaacaccagtgtggctctacgtactttcttccatccaataaatgatatttcatctctgaaaggctat gataagctcaaggagaagtttgccatgtttctcaccaaatatttcgctgatggcagaatagttaatacagatttgagaga caatattgtacaggctttggcctgttatatttgttatcctacctcactgaaggcattagagcaacttccgaatcaaaata aacgtggtatgatacagtcacttatagagccgtatgagaacagatcttgggcccagacaaactggatattggtcagaata tggaaggggtgtggttatggcttccgatacacacatctaccacaccttgtgccgctgaagatacaacctacggagtttgg atttgcttatctccaaaaaccttgtccttctaaagtgtttcaagatgttttacgagaggtgttgctaagcaaccatgaag cagctacaagattcttggacaccttgatcacacagctaaactggtccttctctgaatttgtaggaatgatgcaagaggtt cagcagagagtatccaggacagacacaattcgtatcttggagagtagacagttgaagatctgtgcgacgtgttttgagat tgccgttaatctgatgagagttttagagatggtagttacaattgctccggagttatactcagacgcatcaaaagacatgg ccgatattctcctagcaaggcttgttcagttactgtgccaggtgttgaacagagtgaccagtcacagtggggtgttctct agcgtggtgggtcagttcatacagggattagagagtgtctctcattacccaatcctagctgtaactacaggaatactaat acaactagtccttaaaactgacaaaaacagccaacctcggattctcaaatgcctactgtctgaccccggctttcaaatgt cctcgctggaattcctgttaggaaaacatcaagatgtcaaagttgtagaagataccaaagcttccaaagatttcctagct gacaagaaaaataaacctttctctttcctgaactatgaagaggtaaatgatgaagagaaagagaatataaaaacattagt agcttatcttgatgaacagaaaaaggaatttacgcagcaaactgaggaaattaaagaagaggatttgtgcactatatgct acgctaaccaaatatctgccattttcgcaccttgtggtcatcagtcctgcaaatcatgtattaggcagcagatgatgagc aaaaaagaatgtttcttctgcaaagtggtggtgacctcagtcaaggactttcaaggtcaagtcatactgaccaatcccgg tgctggtaacagactacctcacggccataaacactga |
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Protein
| Protein ID | pfu_aug2.0_453.1_10794.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_453.1_10794.t1 MYIILDHDKYPIDGYQLLQHVPREDVVRSQVLLGCIERLLPVLIEQEEKSEEARLIAQKEEEPPPLGDCRSEKATSLLIA AHLFENLAPILKSAYVVECCLVPLLLKFCNTSTDLHIPLPHITFFLDLAWSLMQEHEIKPCMENLITTLLYSFYKTAPDT SNFSPLRTYLLLTLRILQHQQTRRFLLTNILFDKIKFPVFMHVKPPDDAGLATLMPEVFWATLDNDPDITLPAMTDKDHQ KKKVFLDACDRLRAKVEELEDLQIEILKLLLINSDIIEGKTSRLIFCEKFRTYLKNNVRLGRITQVTTCPLSFLHRLVRA VQFYWDDFQKEDPDRFVFSSEAYLPIHEFWSDTYDSMDLQRCGGLVSHLNRMLGSEVNKAQGFQLTKEGSVFKVQSPQKP SDYPALEMPSGNSLMTLLDMVLLLYHLSSHTQLSKMCSIRDSLKEFVTGLHDTEAKLKICPADNSDIRKELAHARDVLNI KYEDLARQIGWLIAVVYSQRKQEDVAWILRVTMRTVEKASMFHLLFQYLPEFYIENVINTSVALRTFFHPINDISSLKGY DKLKEKFAMFLTKYFADGRIVNTDLRDNIVQALACYICYPTSLKALEQLPNQNKRGMIQSLIEPYENRSWAQTNWILVRI WKGCGYGFRYTHLPHLVPLKIQPTEFGFAYLQKPCPSKVFQDVLREVLLSNHEAATRFLDTLITQLNWSFSEFVGMMQEV QQRVSRTDTIRILESRQLKICATCFEIAVNLMRVLEMVVTIAPELYSDASKDMADILLARLVQLLCQVLNRVTSHSGVFS SVVGQFIQGLESVSHYPILAVTTGILIQLVLKTDKNSQPRILKCLLSDPGFQMSSLEFLLGKHQDVKVVEDTKASKDFLA DKKNKPFSFLNYEEVNDEEKENIKTLVAYLDEQKKEFTQQTEEIKEEDLCTICYANQISAIFAPCGHQSCKSCIRQQMMS KKECFFCKVVVTSVKDFQGQVILTNPGAGNRLPHGHKH |
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