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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_4566.1_22574
Locus scaffold4566.1 : 1 ... 4943 : +
To GenomeBrowser scaffold4566.1:1..4943
Genes list of scaffold scaffold4566.1
Synonym pfu_aug1.0_79611.1_49224

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_4566.1_22574.t1 2 1 Lectin_C 6 58 2.5e-28 98.7 3.3e-11 2.4e-07 31.3
pfu_aug2.0_4566.1_22574.t1 2 2 Lectin_C 92 204 2.5e-28 98.7 5.0e-24 3.7e-20 72.5

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_4566.1_22574.t1 gi|524870397|ref|XP_005091983.1| PREDICTED: macrophage mannose receptor 1-like [Aplysia californica] 3.0e-38
pfu_aug2.0_4566.1_22574.t1 gi|704574415|ref|XP_010186484.1| PREDICTED: macrophage mannose receptor 1-like, partial [Mesitornis unicolor] 2.0e-34

Transcript
Transcript IDpfu_aug2.0_4566.1_22574.t1
Definition-
>pfu_aug2.0_4566.1_22574.t1
aatttaaattacattttaagggttcaacgtttgaatgggacaatggctggacataccaatatacaaagtgggatgataac
gaaccatcggacatacaatcagagagctgtgttattatagattcagggaagtggaacgatataacatgtaacgtcaaact
cccttcagtctgtcagtatagtttagtggatccccctaccacgcccccaccaggaatatgccctaatagtacatctggtt
atcaaggttactgttattttgtggaaatcactcggagtaaatcctgggttggtgctgacgcagcctgtaaggaaatggga
atggagcttgctagcgtacacagtcaagctgaagtgcagtttatacagagttacgcacgtcaaatcagcggacttcaggt
ttctcctaaactttggattggacttcgtaaagatttagatgcatctgcttttgagtggactgacggcactcccttggact
ttctgttttgggaggatggagaaccttctgacgtgtgggaagaggaggacgaagattgtgtagaaatgtacgctcatggt
aaatggaacgacgtcaattgtaacgattataacaagaactacgtttgtaaaacgccacaagttccatatgcaaaaaccac
aatggtacccggggaagataataccaatgttactcagctgatccctaaagacactggaaccaaaacgactaaagccaacc
ctggaaacccaaaacaaccatacttattgccacatactggaactaaatcaagtcctgataaacgaaattctggatcatta
acggcagggcagggtattggaatatttattggaatagcgttaatttgtgcccttgttggagcaggaatttacgttttccg
tcgtattcagagaagtgctacgtacagtacagacagacaagggttctcaaatgctatgtatcataaatcagtagacaatg
tctcttattctgacgacaatggcagtatatcctcacacagtaaaattgttaaaggtgggactcattaa

Protein
Protein IDpfu_aug2.0_4566.1_22574.t1
Definition-
>pfu_aug2.0_4566.1_22574.t1
FKLHFKGSTFEWDNGWTYQYTKWDDNEPSDIQSESCVIIDSGKWNDITCNVKLPSVCQYSLVDPPTTPPPGICPNSTSGY
QGYCYFVEITRSKSWVGADAACKEMGMELASVHSQAEVQFIQSYARQISGLQVSPKLWIGLRKDLDASAFEWTDGTPLDF
LFWEDGEPSDVWEEEDEDCVEMYAHGKWNDVNCNDYNKNYVCKTPQVPYAKTTMVPGEDNTNVTQLIPKDTGTKTTKANP
GNPKQPYLLPHTGTKSSPDKRNSGSLTAGQGIGIFIGIALICALVGAGIYVFRRIQRSATYSTDRQGFSNAMYHKSVDNV
SYSDDNGSISSHSKIVKGGTH

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