Gene
| Gene Model ID | pfu_aug2.0_4573.1_12677 |
|---|---|
| Locus | scaffold4573.1 : 35736 ... 39603 : + |
| To GenomeBrowser | scaffold4573.1:35736..39603 |
| Genes list of scaffold | scaffold4573.1 |
| Synonym | pfu_aug1.0_3537.1_23354 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4573.1_12677.t1 | 2 | 1 | Lectin_C | 27 | 34 | 2.1e-19 | 70.0 | 2.1 | 10000.0 | -2.9 |
| pfu_aug2.0_4573.1_12677.t1 | 2 | 2 | Lectin_C | 42 | 150 | 2.1e-19 | 70.0 | 4.3e-23 | 2.1e-19 | 70.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4573.1_12677.t1 | gi|564253367|ref|XP_006265687.1| | PREDICTED: C-type lectin domain family 4 member M-like [Alligator mississippiensis] | 2.0e-18 |
| pfu_aug2.0_4573.1_12677.t1 | gi|557281120|ref|XP_006023530.1| | PREDICTED: C-type lectin domain family 4 member M-like [Alligator sinensis] | 4.0e-18 |
| pfu_aug2.0_4573.1_12677.t1 | gi|498972909|ref|XP_004548006.1| | PREDICTED: lactose-binding lectin l-2-like [Maylandia zebra] | 9.0e-18 |
| pfu_aug2.0_4573.1_12677.t1 | gi|658903173|ref|XP_008434334.1| | PREDICTED: lactose-binding lectin l-2-like, partial [Poecilia reticulata] | 1.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_4573.1_12677.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4573.1_12677.t1 atgcaacacgaatccttcaatagtttcatctcagggaattatatcggtacaacctcacaatccccatgtcagcatggttg ggtgttgaatgagaagtcttgttaccacgtgagtcgtgattctgcatcatgggtagaagcactgcgaatgtgcgaaatcc atggtgggtccttggcacatattgaaagaagcgaggaacaaatttttattgatggccttatcgctaattttaaattggcc cataatttctggattggaggatctgattggggaaaggagggcgagtgggtgtgggagccagagggtgtgtcgcttaatta caccaactggtacaagggtcgtccagatgattacggacataacgaacattgtcttcttttagagagacattatcatggaa gctgggatgatagagactgccatacagcgtaccattatatatgtgaaacagc |
|
Protein
| Protein ID | pfu_aug2.0_4573.1_12677.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4573.1_12677.t1 MQHESFNSFISGNYIGTTSQSPCQHGWVLNEKSCYHVSRDSASWVEALRMCEIHGGSLAHIERSEEQIFIDGLIANFKLA HNFWIGGSDWGKEGEWVWEPEGVSLNYTNWYKGRPDDYGHNEHCLLLERHYHGSWDDRDCHTAYHYICET |
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