Gene
| Gene Model ID | pfu_aug2.0_458.1_27425 |
|---|---|
| Locus | scaffold458.1 : 127210 ... 154285 : - |
| To GenomeBrowser | scaffold458.1:127210..154285 |
| Genes list of scaffold | scaffold458.1 |
| Synonym | pfu_aug1.0_19411.1_61910 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_458.1_27425.t2 | 5 | 1 | LIM | 65 | 119 | 0.0 | 185.6 | 5.3e-15 | 3.9e-11 | 42.8 |
| pfu_aug2.0_458.1_27425.t2 | 5 | 2 | LIM | 126 | 179 | 0.0 | 185.6 | 6.9e-17 | 5.1e-13 | 48.8 |
| pfu_aug2.0_458.1_27425.t2 | 5 | 3 | LIM | 190 | 241 | 0.0 | 185.6 | 1.3e-13 | 9.6e-10 | 38.3 |
| pfu_aug2.0_458.1_27425.t2 | 5 | 4 | LIM | 248 | 303 | 0.0 | 185.6 | 4.3e-18 | 3.2e-14 | 52.7 |
| pfu_aug2.0_458.1_27425.t2 | 5 | 5 | LIM | 307 | 359 | 0.0 | 185.6 | 2.1e-10 | 1.6e-06 | 28.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_458.1_27425.t2 | gi|642937425|ref|XP_970104.3| | PREDICTED: LIM and senescent cell antigen-like-containing domain protein 1 isoform X1 [Tribolium castaneum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_458.1_27425.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_458.1_27425.t1 atgacaggcagcaccggtatgtccctgggtaatgctgtatgcaccaaatgcagggaggggttcggtgccaacgagcagat catcaactccaatggagaggtgtggtgtacccagtgcttcgtatgtgcccagtgcttccagccttttcctgatggtgtct tctatgagtttgaaggccgaaagtactgtgagcatgactttcaagttctttttgccccatgctgtgcaaaatgcggtgaa ttcatcattggccgagttattaaggcgatgaacaagagctggcatcctgactgttttcgttgtgagctttgtgaagctcc gttggcagatgctggattcgtgaagaatgctggaagagccttgtgtagagaatgcaatgccagggaaagagccaagggaa tgggcaaatatgtctgccatcgttgccatgctattatagaggagggccacatcaagttcagaggagaagcttaccatcct taccacttcaactgttcatcttgcgggtctgagcttgatgtaaatgcccgtgagaaaaatggagagctatactgtctacg ctgtcatgataagatgggaatacccatatgtggggcatgcagacgaccaattgaagaaagagttgttcatgcattaggaa aagcctggcatgtggaacattttgtgtgtgctaaatgtgaaagacctttttacggcacccgtcattatgaaaagaaggga ctagcttactgtgaaactcattatcatcagttatttggtaacatctgtttcgtatgtaacaatgttgttactggtgatgt atttagtgcctttaataaagcctggtgtgtccaccattttgcctgctctatctgtgacagaaagatgagttctaagacaa agttctttgaattcgatttgaaaccggtttgccgagtatgccacgataagttcccaggggaattgaaaaagaggctgaag aaataccacgaagaactagcgaaaaaggcccattaa |
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| Transcript ID | pfu_aug2.0_458.1_27425.t2 |
| Definition | - |
>pfu_aug2.0_458.1_27425.t2 atggctaccgcgaacttacagccaagacccggggtactgaggctccagtccctgagtgataggacagaaagtgaattgtt tcagaggcggaggcaggggcatgaggaaaaggcacctatagtagcagtggccaatggaattgatgggatacaactcttgg acagcaccggtatgtccctgggtaatgctgtatgcaccaaatgcagggaggggttcggtgccaacgagcagatcatcaac tccaatggagaggtgtggtgtacccagtgcttcgtatgtgcccagtgcttccagccttttcctgatggtgtcttctatga gtttgaaggccgaaagtactgtgagcatgactttcaagttctttttgccccatgctgtgcaaaatgcggtgaattcatca ttggccgagttattaaggcgatgaacaagagctggcatcctgactgttttcgttgtgagctttgtgaagctccgttggca gatgctggattcgtgaagaatgctggaagagccttgtgtagagaatgcaatgccagggaaagagccaagggaatgggcaa atatgtctgccatcgttgccatgctattatagaggagggccacatcaagttcagaggagaagcttaccatccttaccact tcaactgttcatcttgcgggtctgagcttgatgtaaatgcccgtgagaaaaatggagagctatactgtctacgctgtcat gataagatgggaatacccatatgtggggcatgcagacgaccaattgaagaaagagttgttcatgcattaggaaaagcctg gcatgtggaacattttgtgtgtgctaaatgtgaaagacctttttacggcacccgtcattatgaaaagaagggactagctt actgtgaaactcattatcatcagttatttggtaacatctgtttcgtatgtaacaatgttgttactggtgatgtatttagt gcctttaataaagcctggtgtgtccaccattttgcctgctctatctgtgacagaaagatgagttctaagacaaagttctt tgaattcgatttgaaaccggtttgccgagtatgccacgataagttcccaggggaattgaaaaagaggctgaagaaatacc acgaagaactagcgaaaaaggcccattaa |
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Protein
| Protein ID | pfu_aug2.0_458.1_27425.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_458.1_27425.t1 MTGSTGMSLGNAVCTKCREGFGANEQIINSNGEVWCTQCFVCAQCFQPFPDGVFYEFEGRKYCEHDFQVLFAPCCAKCGE FIIGRVIKAMNKSWHPDCFRCELCEAPLADAGFVKNAGRALCRECNARERAKGMGKYVCHRCHAIIEEGHIKFRGEAYHP YHFNCSSCGSELDVNAREKNGELYCLRCHDKMGIPICGACRRPIEERVVHALGKAWHVEHFVCAKCERPFYGTRHYEKKG LAYCETHYHQLFGNICFVCNNVVTGDVFSAFNKAWCVHHFACSICDRKMSSKTKFFEFDLKPVCRVCHDKFPGELKKRLK KYHEELAKKAH |
|
| Protein ID | pfu_aug2.0_458.1_27425.t2 |
| Definition | - |
>pfu_aug2.0_458.1_27425.t2 MATANLQPRPGVLRLQSLSDRTESELFQRRRQGHEEKAPIVAVANGIDGIQLLDSTGMSLGNAVCTKCREGFGANEQIIN SNGEVWCTQCFVCAQCFQPFPDGVFYEFEGRKYCEHDFQVLFAPCCAKCGEFIIGRVIKAMNKSWHPDCFRCELCEAPLA DAGFVKNAGRALCRECNARERAKGMGKYVCHRCHAIIEEGHIKFRGEAYHPYHFNCSSCGSELDVNAREKNGELYCLRCH DKMGIPICGACRRPIEERVVHALGKAWHVEHFVCAKCERPFYGTRHYEKKGLAYCETHYHQLFGNICFVCNNVVTGDVFS AFNKAWCVHHFACSICDRKMSSKTKFFEFDLKPVCRVCHDKFPGELKKRLKKYHEELAKKAH |
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