Gene
| Gene Model ID | pfu_aug2.0_459.1_30787 |
|---|---|
| Locus | scaffold459.1 : 81266 ... 99365 : - |
| To GenomeBrowser | scaffold459.1:81266..99365 |
| Genes list of scaffold | scaffold459.1 |
| Synonym | pfu_aug1.0_4211.1_66915 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_459.1_30787.t1 | 1 | 1 | THUMP | 257 | 315 | 7.9e-08 | 32.2 | 6.5e-11 | 1.9e-07 | 31.0 |
| pfu_aug2.0_459.1_30787.t1 | 1 | 1 | UPF0020 | 331 | 488 | 4.1e-30 | 104.6 | 2.7e-33 | 7.9e-30 | 103.7 |
| pfu_aug2.0_459.1_30787.t1 | 1 | 1 | Methyltransf_26 | 353 | 475 | 2.5e-11 | 43.6 | 1.4e-14 | 4.1e-11 | 42.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_459.1_30787.t1 | gi|676467513|ref|XP_009057912.1| | hypothetical protein LOTGIDRAFT_105490, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_459.1_30787.t1 | gi|602661531|ref|XP_007436415.1| | PREDICTED: THUMP domain-containing protein 3-like [Python bivittatus] | 0.0 |
| pfu_aug2.0_459.1_30787.t1 | gi|729722650|ref|XP_010571439.1| | PREDICTED: THUMP domain-containing protein 3, partial [Haliaeetus leucocephalus] | 0.0 |
| pfu_aug2.0_459.1_30787.t1 | gi|683937678|ref|XP_009097597.1| | PREDICTED: THUMP domain-containing protein 3 [Serinus canaria] | 0.0 |
| pfu_aug2.0_459.1_30787.t1 | gi|126336383|ref|XP_001375174.1| | PREDICTED: THUMP domain-containing protein 3 isoform X1 [Monodelphis domestica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_459.1_30787.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_459.1_30787.t1 atgtctgcggccatggataacgtggctgaacctgaatcaaaagatttggaaagactatgtgaaatagaagcaactgtggc cactgggttggaagaaatagctaaagatgaagctgatgaaaagcttggagttgattcacgaatatctcgcggcagaattt tgtttcaaattcctgtcaaaaatgtttcgaaggcattagagctcggctgtatcgacaacctcttcatattgatgacagag aggagtaatttcccttttgtagatgatgaattggagtgtatgaagcttttgagggcattcgttaaggaagtagactggcc ccatggtctggcagcttggaatcaaatattcagctttcatgtgcccataatttcaagacctgaacatgttccagagatct taggggaagcacaactctcatcaagacatcatcaaaagactgatacagaaggatccactcaaaagaagaagaataagaag agtaagcgacaaggaaaatggagtaaacccaaaaagaatgagagggacgaagcacagaatgaaaataaagaagaacaagg tgacaaagacgtagattcaaaacaagaacatcaaaaagacgaagaagaagatgctttgagagatcaaaagaatgataaag aggacaaatcaaaagtaactgatctcagtgaagatgtagaagataagaatgaagaatcaaaaacagaattggatgaagat ccagctttaaagaaaccaaggactaaactcacttcccataatccccttcttccatcatttcgagtgacgtgtaatagaaa tggtaaaaatcaccgttttgactcaatgggagcagcttcaaattttgggggtgcagtgaatgagtactttggttggaatg tctccatgaagaactttgacatagaagtagttttgaatattgaagaaacagatttgcgtgtttgcctggccttgactaag gagagtatgcacaagagaaatattatatcttttggaccaacaacacttagaccaacaatagccttctgtctattaagatt atgtaagataaaagaaggagatgtggtgtgtgacccaatgtgtggaactggcagtattcccatacaggcatcccttggct ggccaggtagctaccacctgtgtggagaaatcaacaacaaatccttatccagaacgtcggaaaatatccaacatgtcaat gacttacggaaagaggcggataagggacagattcagttagatcctttgaaatggaatgcccattatctcccgttacgtac agattctgtggatgtgtttgtgacagatttgccttttggtgttaggatgggttccaagcaggacaattggaagctttacc caggggctatgatggacatggcaaggacgtgtaaggttggatcaggcagagctactatactgacacaggacaaaaagtgc tttaataaggcattagcaataacagcaaagtactggaagtgttggcgtatgacaggctttaacatgggaggactggcagg ctgcatttactctctgtacagaaccaaggaagtatttgatgataaggattccagttcttggatggccgaggtggacgcaa cagccaggaaaaaagacaattag |
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Protein
| Protein ID | pfu_aug2.0_459.1_30787.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_459.1_30787.t1 MSAAMDNVAEPESKDLERLCEIEATVATGLEEIAKDEADEKLGVDSRISRGRILFQIPVKNVSKALELGCIDNLFILMTE RSNFPFVDDELECMKLLRAFVKEVDWPHGLAAWNQIFSFHVPIISRPEHVPEILGEAQLSSRHHQKTDTEGSTQKKKNKK SKRQGKWSKPKKNERDEAQNENKEEQGDKDVDSKQEHQKDEEEDALRDQKNDKEDKSKVTDLSEDVEDKNEESKTELDED PALKKPRTKLTSHNPLLPSFRVTCNRNGKNHRFDSMGAASNFGGAVNEYFGWNVSMKNFDIEVVLNIEETDLRVCLALTK ESMHKRNIISFGPTTLRPTIAFCLLRLCKIKEGDVVCDPMCGTGSIPIQASLGWPGSYHLCGEINNKSLSRTSENIQHVN DLRKEADKGQIQLDPLKWNAHYLPLRTDSVDVFVTDLPFGVRMGSKQDNWKLYPGAMMDMARTCKVGSGRATILTQDKKC FNKALAITAKYWKCWRMTGFNMGGLAGCIYSLYRTKEVFDDKDSSSWMAEVDATARKKDN |
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