Gene
| Gene Model ID | pfu_aug2.0_459.1_30793 |
|---|---|
| Locus | scaffold459.1 : 204156 ... 225700 : + |
| To GenomeBrowser | scaffold459.1:204156..225700 |
| Genes list of scaffold | scaffold459.1 |
| Synonym | pfu_aug1.0_12998.1_53887 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_459.1_30793.t4 | 1 | 1 | CCDC66 | 1 | 93 | 1.3e-12 | 47.6 | 7.7e-16 | 1.6e-12 | 47.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_459.1_30793.t4 | gi|591387691|ref|XP_007068260.1| | PREDICTED: coiled-coil domain-containing protein 66 isoform X2 [Chelonia mydas] | 2.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_459.1_30793.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_459.1_30793.t1 atgtatacatttaagtacaaggggagggatcaacaattcagaatcagaaatcaccccaggaatttggacagaatatctcc agagagggacaatatcctcaagcctatagctcaaaatggagttacggatgatgacacagaggagaaacctaaaaaaccac agaaaaactttatacaacgaaaccgagataaggctgggctaaaacaagccaaggggaagaaatctgcaaagaaagaggac ccaaacgacaagactgtgaccttgacccaagaacagctgaatgccatcctagcttctgtaggacaggtggcatcaggaga agaagataaacttaagatatcaatagatgaaggaaacggcattactatagagtctcctcgaaggaatgatgaagatgatc gcgacagacatggaagaaatgacaggaaaacaacaaaaagcaggaaagggaaaaaagaggaagacagtatatactcactc ctacagaaagatactcacagatctcacagggatgaagatgagagaataagtgacaggagggaaaagaaacatgtagagag agaagacacagatgatgtattattaaggaagctcaaggaaaggttcgctcctgaacttgacaaaaaatctcgtgagcacg agagtagaggacgttactcaccagatagagagagagatgattctgttgaaaggtctcgaaaatcaagacgagacaaagga aaaagtagagagagataccgagacgattcacgtgatagatatgatgacaatgatcggggaagagaaggagaagcagttaa agcaaaatggagtgaattacagcaaaaggattctggtgataatagagacaaacataggaaatctaaacctagtaggtcac gagaacgttcacgggagagaactcctgagagtgacatatccagggacaggtatgatagacgtgaaaaatcacgggatagg catgacagatctcgagacagaagggacagatctcgagataggggtgacagatctcgagatagacactaccgcagatcaag aactccgtcacctgctgatgacgaccatagaactacagatagttttcctctatctgattctaaatccttaccaactctaa cgtttgctgaaaagaagaaacttcagtgggaaagagaaagagctgagtctgctgccagagaggcgggataccacccatgg ggaaagccaggagctggggcaccactacggacacggtcagggaaagtggctgcagactacaaatctagacaggacggatc ctactctccaattgaagaggaggaaaacgaggagcataggtcaaaacaagagaagaaaagggaggaggagccaaggagaa aatctgaccaatcacggaagaggaaacatgagagggcggagcatgcacagcaagatggcagtaatgtaatcatgcaatct cagtcccatgttcctgcagcaatgagaagttcctttgtgtttggtggacttgcaccaagtactgatatacaggagaatat caaggaagaggaaaggaaacaatggatcaaagaattagatagacagagagaagaaaaaagaattgcacagatgaaggagt tagagactaacagaggccaaccaagtacttgggcagataagtttagtaaggaccataagccccttgggcttccagagcag cctaggatacaagataaagaagatattgtggacacagggagagtgagcagtgccccaggggctgtacagaaccctgatga tgatgatgatgatgaaaggtaa |
|
| Transcript ID | pfu_aug2.0_459.1_30793.t2 |
| Definition | - |
>pfu_aug2.0_459.1_30793.t2 atgtccgaggggggacgcactcccaggagtgttaatagacagcctagtacacggcgtacaaagtcacattccccagatct gaggggagatactagacttttagacaggtctctgtctccagttcatagaagtcagtctccgccagcaagtcatcgttcaa tcacaccacaaatcttctcccagcgagggaggtcacctcctatacccgccctcagacacagacattataacgaaggacca gacgtccttaaagtcgaacataacgctttggtgccagtaactaggatttctaacactaaatatggtgacactgatccact tgagattcctgtgggaaatagtgattttgtgccgactattgatattttagaccctgccttggccacacagcccatgccag tttccagagaggccacacaagtagaaaatgccaggaaggcatatatcaagggaatgaagccagggaattatggaaacaga gtggatatgtaccaagacaggatgcgtatgcctaatgaaactagggttaaggatcctatactgaatccatctctagtcaa agatcaccctacacacagacaggacatgatactacagcagttatcttctcttaaagagaatttaatccagaggcagagag agctagagaccttttcacctactgatctggagtaa |
|
| Transcript ID | pfu_aug2.0_459.1_30793.t3 |
| Definition | - |
>pfu_aug2.0_459.1_30793.t3 atgtattttaagtacaaggggagggatcaacaattcagaatcagaaatcaccccaggaatttggacagaatatctccaga gagggacaatatcctcaagcctatagctcaaaatggagttacggatgatgacacagaggagaaacctaaaaaaccacaga aaaactttatacaacgaaaccgagataaggctgggctaaaacaagccaaggggaagaaatctgcaaagaaagaggaccca aacgacaagactgtgaccttgacccaagaacagctgaatgccatcctagcttctgtaggacaggtggcatcaggagaaga agataaacttaagatatcaatagatgaaggaaacggcattactatagagtctcctcgaaggaatgatgaagatgatcgcg acagacatggaagaaatgacaggaaaacaacaaaaagcaggaaagggaaaaaagaggaagacagtatatactcactccta cagaaagatactcacagatctcacagggatgaagatgagagaataagtgacaggagggaaaagaaacatgtagagagaga agacacagatgatgtattattaaggaagctcaaggaaaggttcgctcctgaacttgacaaaaaatctcgtgagcacgaga gtagaggacgttactcaccagatagagagagagatgattctgttgaaaggtctcgaaaatcaagacgagacaaaggaaaa agtagagagagataccgagacgattcacgtgatagatatgatgacaatgatcggggaagagaaggagaagcagttaaagc aaaatggagtgaattacagcaaaaggattctggtgataatagagacaaacataggaaatctaaacctagtaggtcacgag aacgttcacgggagagaactcctgagagtgacatatccagggacaggtatgatagacgtgaaaaatcacgggataggcat gacagatctcgagacagaagggacagatctcgagataggggtgacagatctcgagatagacactaccgcagatcaagaac tccgtcacctgctgatgacgaccatagaactacagatagttttcctctatctgattctaaatccttaccaactctaacgt ttgctgaaaagaagaaacttcagtgggaaagagaaagagctgagtctgctgccagagaggcgggataccacccatgggga aagccaggagctggggcaccactacggacacggtcagggaaagtggctgcagactacaaatctagacaggacggatccta ctctccaattgaagaggaggaaaacgaggagcataggtcaaaacaagagaagaaaagggaggaggagccaaggagaaaat ctgaccaatcacggaagaggaaacatgagagggcggagcatgcacagcaagatggcagtaatgtaatcatgcaatctcag tcccatgttcctgcagcaatgagaagttcctttgtgtttggtggacttgcaccaagtactgatatacaggagaatatcaa ggaagaggaaaggaaacaatggatcaaagaattagatagacagagagaagaaaaaagaattgcacagatgaaggagttag agactaacagaggccaaccaagtacttgggcagataagtttagtaaggaccataagccccttgggcttccagagcagcct aggatacaagataaagaagatattgtggacacagggagagtgagcagtgccccaggggctgtacagaaccctgatgatga tgatgatgatgaaagcgcattctcctctcaatcgcgggcattctcgtctcatcgtgtcactatcgtgtcatgttctcctg cattctcctctgttcgcagcaccaaggcgaatgcttcaaactgtttaaaacattcgcgtctgaattcttattcgcctcaa actcacggcacatgcgcagcgcattcgccttgcattctcctccattcgcggcatgttctcctcacattcgtgttcattct tgttccaaagaaagccattatggagcaggtacaggagagacagcgtcaaaaacagcaggagaaggaacgtaaaatgaggg aagacatggaggaggagaataaacttaaagctgagagagaacggctacagagacaacaagaaatagagatgaacaaagtc aagatgaaggagatgaagcgacaagaggaagttgaaaagttaaaagcaacaatggacgaggctcatgaacaggcattacg ggaaaaatataatcgtaaaatgcagcatctagagcagggagggcacgatgtgtctcacctcaaagcaaacttagcagcaa aactgactccccgagaagaggcaaattatgtggaaccaacccatgtaccaggcttgaaccttgacttatcccctagagct gttcccatggtaacaacaggtcacatgacacagaaggacatggtgatggagccactatatacagagaacagggtcctaac gcccagtagataccgtaggagccaggggtcatctccaaagcgggagtttggcacacaaactgatgaaagtctggagaagc aggtggcaagtttagttcagggccgggaagtcaccgacataggaattatgtataagattgtaaatggtagaaaaaagtgg aactttcagaacaaagaattgaagaggccagtcaagcagtcagaaagagatccattttatgagaaaagacagaaggaaag aatacaacggcaagaaaaaagaaagcaggagttattgcagttagtagaaaagaacttagacaggattcccacagaaaggc caaacagaactcctggaagctcacgcagccattcccctatgtccgaggggggacgcactcccaggagtgttaatagacag cctagtacacggcgtacaaagtcacattccccagatctgaggggagatactagacttttagacaggtctctgtctccagt tcatagaagtcagtctccgccagcaagtcatcgttcaatcacaccacaaatcttctcccagcgagggaggtcacctccta tacccgccctcagacacagacattataacgaaggaccagacgtccttaaagtcgaacataacgctttggtgccagtaact aggatttctaacactaaatatggtgacactgatccacttgagattcctgtgggaaatagtgattttgtgccgactattga tattttagaccctgccttggccacacagcccatgccagtttccagagaggccacacaagtagaaaatgccaggaaggcat atatcaagggaatgaagccagggaattatggaaacagagtggatatgtaccaagacaggatgcgtatgcctaatgaaact agggttaaggatcctatactgaatccatctctagtcaaagatcaccctacacacagacaggacatgatactacagcagtt atcttctcttaaagagaatttaatccagaggcagagagagctagagaccttttcacctactgatctggagtaa |
|
| Transcript ID | pfu_aug2.0_459.1_30793.t4 |
| Definition | - |
>pfu_aug2.0_459.1_30793.t4 atggagcaggtacaggagagacagcgtcaaaaacagcaggagaaggaacgtaaaatgagggaagacatggaggaggagaa taaacttaaagctgagagagaacggctacagagacaacaagaaatagagatgaacaaagtcaagatgaaggagatgaagc gacaagaggaagttgaaaagttaaaagcaacaatggacgaggctcatgaacaggcattacgggaaaaatataatcgtaaa atgcagcatctagagcagggagggcacgatgtgtctcacctcaaagcaaacttagcagcaaaactgactccccgagaaga ggcaaattatgtggaaccaacccatgtaccaggcttgaaccttgacttatcccctagagctgttcccatggtaacaacag gtcacatgacacagaaggacatggtgatggagccactatatacagagaacagggtcctaacgcccagtagataccgtagg agccaggggtcatctccaaagcgggagtttggcacacaaactggtatgaaacatgatgccaatgttaatccagagctagg ggatgtatcaatagtaattgtagcccagctggcatgttactatagcagatga |
|
Protein
| Protein ID | pfu_aug2.0_459.1_30793.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_459.1_30793.t1 MYTFKYKGRDQQFRIRNHPRNLDRISPERDNILKPIAQNGVTDDDTEEKPKKPQKNFIQRNRDKAGLKQAKGKKSAKKED PNDKTVTLTQEQLNAILASVGQVASGEEDKLKISIDEGNGITIESPRRNDEDDRDRHGRNDRKTTKSRKGKKEEDSIYSL LQKDTHRSHRDEDERISDRREKKHVEREDTDDVLLRKLKERFAPELDKKSREHESRGRYSPDRERDDSVERSRKSRRDKG KSRERYRDDSRDRYDDNDRGREGEAVKAKWSELQQKDSGDNRDKHRKSKPSRSRERSRERTPESDISRDRYDRREKSRDR HDRSRDRRDRSRDRGDRSRDRHYRRSRTPSPADDDHRTTDSFPLSDSKSLPTLTFAEKKKLQWERERAESAAREAGYHPW GKPGAGAPLRTRSGKVAADYKSRQDGSYSPIEEEENEEHRSKQEKKREEEPRRKSDQSRKRKHERAEHAQQDGSNVIMQS QSHVPAAMRSSFVFGGLAPSTDIQENIKEEERKQWIKELDRQREEKRIAQMKELETNRGQPSTWADKFSKDHKPLGLPEQ PRIQDKEDIVDTGRVSSAPGAVQNPDDDDDDER |
|
| Protein ID | pfu_aug2.0_459.1_30793.t2 |
| Definition | - |
>pfu_aug2.0_459.1_30793.t2 MSEGGRTPRSVNRQPSTRRTKSHSPDLRGDTRLLDRSLSPVHRSQSPPASHRSITPQIFSQRGRSPPIPALRHRHYNEGP DVLKVEHNALVPVTRISNTKYGDTDPLEIPVGNSDFVPTIDILDPALATQPMPVSREATQVENARKAYIKGMKPGNYGNR VDMYQDRMRMPNETRVKDPILNPSLVKDHPTHRQDMILQQLSSLKENLIQRQRELETFSPTDLE |
|
| Protein ID | pfu_aug2.0_459.1_30793.t3 |
| Definition | - |
>pfu_aug2.0_459.1_30793.t3 MYFKYKGRDQQFRIRNHPRNLDRISPERDNILKPIAQNGVTDDDTEEKPKKPQKNFIQRNRDKAGLKQAKGKKSAKKEDP NDKTVTLTQEQLNAILASVGQVASGEEDKLKISIDEGNGITIESPRRNDEDDRDRHGRNDRKTTKSRKGKKEEDSIYSLL QKDTHRSHRDEDERISDRREKKHVEREDTDDVLLRKLKERFAPELDKKSREHESRGRYSPDRERDDSVERSRKSRRDKGK SRERYRDDSRDRYDDNDRGREGEAVKAKWSELQQKDSGDNRDKHRKSKPSRSRERSRERTPESDISRDRYDRREKSRDRH DRSRDRRDRSRDRGDRSRDRHYRRSRTPSPADDDHRTTDSFPLSDSKSLPTLTFAEKKKLQWERERAESAAREAGYHPWG KPGAGAPLRTRSGKVAADYKSRQDGSYSPIEEEENEEHRSKQEKKREEEPRRKSDQSRKRKHERAEHAQQDGSNVIMQSQ SHVPAAMRSSFVFGGLAPSTDIQENIKEEERKQWIKELDRQREEKRIAQMKELETNRGQPSTWADKFSKDHKPLGLPEQP RIQDKEDIVDTGRVSSAPGAVQNPDDDDDDESAFSSQSRAFSSHRVTIVSCSPAFSSVRSTKANASNCLKHSRLNSYSPQ THGTCAAHSPCILLHSRHVLLTFVFILVPKKAIMEQVQERQRQKQQEKERKMREDMEEENKLKAERERLQRQQEIEMNKV KMKEMKRQEEVEKLKATMDEAHEQALREKYNRKMQHLEQGGHDVSHLKANLAAKLTPREEANYVEPTHVPGLNLDLSPRA VPMVTTGHMTQKDMVMEPLYTENRVLTPSRYRRSQGSSPKREFGTQTDESLEKQVASLVQGREVTDIGIMYKIVNGRKKW NFQNKELKRPVKQSERDPFYEKRQKERIQRQEKRKQELLQLVEKNLDRIPTERPNRTPGSSRSHSPMSEGGRTPRSVNRQ PSTRRTKSHSPDLRGDTRLLDRSLSPVHRSQSPPASHRSITPQIFSQRGRSPPIPALRHRHYNEGPDVLKVEHNALVPVT RISNTKYGDTDPLEIPVGNSDFVPTIDILDPALATQPMPVSREATQVENARKAYIKGMKPGNYGNRVDMYQDRMRMPNET RVKDPILNPSLVKDHPTHRQDMILQQLSSLKENLIQRQRELETFSPTDLE |
|
| Protein ID | pfu_aug2.0_459.1_30793.t4 |
| Definition | - |
>pfu_aug2.0_459.1_30793.t4 MEQVQERQRQKQQEKERKMREDMEEENKLKAERERLQRQQEIEMNKVKMKEMKRQEEVEKLKATMDEAHEQALREKYNRK MQHLEQGGHDVSHLKANLAAKLTPREEANYVEPTHVPGLNLDLSPRAVPMVTTGHMTQKDMVMEPLYTENRVLTPSRYRR SQGSSPKREFGTQTGMKHDANVNPELGDVSIVIVAQLACYYSR |
|