Gene
| Gene Model ID | pfu_aug2.0_46.1_20104 |
|---|---|
| Locus | scaffold46.1 : 16546 ... 48476 : + |
| To GenomeBrowser | scaffold46.1:16546..48476 |
| Genes list of scaffold | scaffold46.1 |
| Synonym | pfu_aug1.0_76.1_29063 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_46.1_20104.t1 | 2 | 1 | RVT_1 | 292 | 439 | 5.0e-24 | 84.8 | 1.3e-27 | 9.9e-24 | 83.8 |
| pfu_aug2.0_46.1_20104.t1 | 2 | 2 | RVT_1 | 598 | 640 | 5.0e-24 | 84.8 | 0.57 | 4200.0 | -3.2 |
| pfu_aug2.0_46.1_20104.t1 | 4 | 1 | Atx10homo_assoc | 691 | 707 | 2.0e-32 | 110.9 | 0.083 | 620.0 | 0.2 |
| pfu_aug2.0_46.1_20104.t1 | 4 | 2 | Atx10homo_assoc | 739 | 761 | 2.0e-32 | 110.9 | 0.04 | 290.0 | 1.2 |
| pfu_aug2.0_46.1_20104.t1 | 4 | 3 | Atx10homo_assoc | 839 | 862 | 2.0e-32 | 110.9 | 1.7 | 13000.0 | -4.1 |
| pfu_aug2.0_46.1_20104.t1 | 4 | 4 | Atx10homo_assoc | 922 | 1021 | 2.0e-32 | 110.9 | 3.4e-35 | 2.5e-31 | 107.4 |
Transcript
| Transcript ID | pfu_aug2.0_46.1_20104.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_46.1_20104.t1 atgtcaaacaaaaaatacagcaaaccaaaacgtaggaaagtatacaaatacagtaaagcaaactgggaaaacatacgtac atcagtcaggtcgctgggtaccgacattatacaacacacagaagacagcatagagaaaaagtggacggatctaaaggagg gaattacgaaaataatgaacgataatattccatcgaaacaaacatttgaacgatataacttaccatggatggacaaccac ctatgtaaggaagtcaagaagaaacacaaatacatgcaaaaagctaaagaactgaataccagcgaagcatgggacatcta caaggaacaaaagcgtttagtacagaaaagcataagacgtgcacattggaaatatgtaaatgaaactattgagaaatcat tagacgaagggaacaacaaaacattctggaaatacattaaggctaagagacacgacaacattggagtagcaggtatcaaa agtgaagggattttacaccaggatagcaaaaccaaagcagaattgttaaacaaacaatttgaatctgtatttacgaaaga aaatagtgaggagacattaccatctcttagtgaaacaccatatcctaagatgtctgatatcaaggttcgtatagacggag taaaaaaacttcttgggaaactcgacacccataaggctagttgtcccaataatatagcaaacacgatgctaaaaaactgt gctgaagaacttgcatctgtgttctctaacatttttcaacaaagccttgatacaggcaccctaccaaaggactggcgaaa tgccaatatcagcctagtgttcaagaagggaaataaacacgtagcaagcaactaccgtccagtctcgttaacaagtaccg acatggtcatactagactttagtaaagcttttgacactgtgacccatcggaaattgctttacaaattagacaactatgga atcttggggactacgcacgcctggataagctcatttctcacacaatgtgaacaaagggtagtcattgacggagaggcttc atcatcttgtaccgttgattccggggtaccccagggtaccgtactggggcccctgctatttctctgccacataaatgact tgccaaaatgtgtcacatcccaagtatgtctctttgcagatgattgtctgttatacatgtataggcctattaagtgcata gacgaccaaatcaagctccaacaagaccttgaatctctggagttatgggcactggattggggcatgcggtttaatgcttc gaaatgctatctcatgtctatcgctaggagtaagcatccgcatcagtttcgttatacattggataatcatattcttgaac atgttcacgataatccgtaccttggaatcacactcagtgacagcctcaagtggtctacacacattaataaaatttcaaac cgtgcaaactccatactaggatttctccgtcgaaacttaaaatattgctctaaatctctaaaggagaccacttatacatc acttgtacgttctattttggattacgcttcagtcgtttgggatccgtaccagagaaaggatgttgatcaactagaaggaa tacaaaggcgtgctgcccgttttgtttgcaacgattacagtagatacagtagtgtctccaagatgatggaggaactcaag tggcgaccacttgcagatcgtcgacgtgacctgtgtctcatattacaatataaaatcatacatgacctagtagccatacc cgctgactcgctcttcgaatataataccagatcatctagaactctacatagcatggcgtttcaccaaactcaaactgaaa tatctaacatcaacaatgaattaaaatcaccaaacctagatttttcgagtttgcgctcagctttagaagatgttacacgt aacacagtttgtaagaataggtccaatttgactaaggaggatagcttggtttttctctcagctttagccaaacttacatc acattacaatgggcagaggagccagcataaaattccagttatccagtgtttgacggagttattccgcagccttcggaatt cttgtgtcgactgtccgcagaaccaggactatgtatcagagagccctcaatattttgtctgtgttgctgatcttgtgggg aaactcccattggaagatgatggtagcagagaagagatgactatcttgtatagatgtctcgttcagttccttggaaactg tgttacacaacatgagaggaatcagcaactggttttggaacatgtttttcctatgtttagattgctactcgagtttgggg atgacaagctcgctagttttacatgtatggtgattcacaattgtttaatgggatgctgtcctatccaaaaagatacatgc cttgacagcacagctatgataggagtacttgtggctgtaatacgaaactctgcagtaggagggagtgaatttagggtctt tgaaaagggtgtggtcattttctccgatgtaaatcttcgtaatcttgtgaacaacacttctcagaaaataggtcatctga tagtaaagcagctagaagctttagggatggccagtggtctgcaggatttatatggtctgctgaaggaggacaaggaccta ctaaccgtctcactacatttacttcatgctatacataagttgggaaaggagggaaacaatacatttgcagcagtaacaaa agtaacagaaagagataaagtggatccttctcatcctgtttatggcctcaaaagggatctgatcaagctcataggaaata tggtctatcagcacagagcaaaccaagacatggtacgtgagatggacggaatagccttaattttagatcaaacaaacatc gatggaagaaatccttttataacacagtgggcggtcctggccattcgtaacctttgtgacaataaccaggaaaacaaagc agttttagcgtctctgaaaatggaaggtttggacaggaatgcgtctatcctggaggagatgggaatcaatgctgaagtac ggggagacaaggtgtacgtgaaaccctcaggaaagtga |
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Protein
| Protein ID | pfu_aug2.0_46.1_20104.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_46.1_20104.t1 MSNKKYSKPKRRKVYKYSKANWENIRTSVRSLGTDIIQHTEDSIEKKWTDLKEGITKIMNDNIPSKQTFERYNLPWMDNH LCKEVKKKHKYMQKAKELNTSEAWDIYKEQKRLVQKSIRRAHWKYVNETIEKSLDEGNNKTFWKYIKAKRHDNIGVAGIK SEGILHQDSKTKAELLNKQFESVFTKENSEETLPSLSETPYPKMSDIKVRIDGVKKLLGKLDTHKASCPNNIANTMLKNC AEELASVFSNIFQQSLDTGTLPKDWRNANISLVFKKGNKHVASNYRPVSLTSTDMVILDFSKAFDTVTHRKLLYKLDNYG ILGTTHAWISSFLTQCEQRVVIDGEASSSCTVDSGVPQGTVLGPLLFLCHINDLPKCVTSQVCLFADDCLLYMYRPIKCI DDQIKLQQDLESLELWALDWGMRFNASKCYLMSIARSKHPHQFRYTLDNHILEHVHDNPYLGITLSDSLKWSTHINKISN RANSILGFLRRNLKYCSKSLKETTYTSLVRSILDYASVVWDPYQRKDVDQLEGIQRRAARFVCNDYSRYSSVSKMMEELK WRPLADRRRDLCLILQYKIIHDLVAIPADSLFEYNTRSSRTLHSMAFHQTQTEISNINNELKSPNLDFSSLRSALEDVTR NTVCKNRSNLTKEDSLVFLSALAKLTSHYNGQRSQHKIPVIQCLTELFRSLRNSCVDCPQNQDYVSESPQYFVCVADLVG KLPLEDDGSREEMTILYRCLVQFLGNCVTQHERNQQLVLEHVFPMFRLLLEFGDDKLASFTCMVIHNCLMGCCPIQKDTC LDSTAMIGVLVAVIRNSAVGGSEFRVFEKGVVIFSDVNLRNLVNNTSQKIGHLIVKQLEALGMASGLQDLYGLLKEDKDL LTVSLHLLHAIHKLGKEGNNTFAAVTKVTERDKVDPSHPVYGLKRDLIKLIGNMVYQHRANQDMVREMDGIALILDQTNI DGRNPFITQWAVLAIRNLCDNNQENKAVLASLKMEGLDRNASILEEMGINAEVRGDKVYVKPSGK |
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