Gene
| Gene Model ID | pfu_aug2.0_46.1_20110 |
|---|---|
| Locus | scaffold46.1 : 292791 ... 309332 : - |
| To GenomeBrowser | scaffold46.1:292791..309332 |
| Genes list of scaffold | scaffold46.1 |
| Synonym | pfu_aug1.0_6559.1_31238 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_46.1_20110.t1 | 5 | 1 | Viral_helicase1 | 59 | 108 | 2.9e-08 | 33.5 | 1.7 | 2500.0 | -2.3 |
| pfu_aug2.0_46.1_20110.t1 | 4 | 1 | UvrD-helicase | 198 | 232 | 2.4e-13 | 50.0 | 5.6e-05 | 0.083 | 12.1 |
| pfu_aug2.0_46.1_20110.t1 | 3 | 1 | AAA_30 | 198 | 236 | 6.5e-07 | 29.1 | 1.0e-05 | 0.015 | 14.8 |
| pfu_aug2.0_46.1_20110.t1 | 2 | 1 | ResIII | 214 | 259 | 5.2e-11 | 42.7 | 2.2e-07 | 0.00033 | 20.5 |
| pfu_aug2.0_46.1_20110.t1 | 5 | 2 | Viral_helicase1 | 219 | 256 | 2.9e-08 | 33.5 | 0.0097 | 14.0 | 5.0 |
| pfu_aug2.0_46.1_20110.t1 | 2 | 2 | ResIII | 281 | 328 | 5.2e-11 | 42.7 | 5.6e-07 | 0.00084 | 19.2 |
| pfu_aug2.0_46.1_20110.t1 | 4 | 2 | UvrD-helicase | 282 | 293 | 2.4e-13 | 50.0 | 0.016 | 23.0 | 4.1 |
| pfu_aug2.0_46.1_20110.t1 | 3 | 2 | AAA_30 | 282 | 297 | 6.5e-07 | 29.1 | 0.022 | 33.0 | 3.9 |
| pfu_aug2.0_46.1_20110.t1 | 5 | 3 | Viral_helicase1 | 283 | 317 | 2.9e-08 | 33.5 | 0.096 | 140.0 | 1.8 |
| pfu_aug2.0_46.1_20110.t1 | 5 | 4 | Viral_helicase1 | 403 | 484 | 2.9e-08 | 33.5 | 3.2e-06 | 0.0047 | 16.4 |
| pfu_aug2.0_46.1_20110.t1 | 4 | 3 | UvrD-helicase | 410 | 454 | 2.4e-13 | 50.0 | 2.3e-12 | 3.4e-09 | 36.4 |
| pfu_aug2.0_46.1_20110.t1 | 3 | 3 | AAA_30 | 410 | 479 | 6.5e-07 | 29.1 | 0.0046 | 6.8 | 6.2 |
| pfu_aug2.0_46.1_20110.t1 | 2 | 1 | UvrD_C | 561 | 702 | 8.4e-12 | 45.2 | 1.7e-14 | 2.5e-11 | 43.6 |
| pfu_aug2.0_46.1_20110.t1 | 4 | 4 | UvrD-helicase | 563 | 613 | 2.4e-13 | 50.0 | 0.55 | 810.0 | -1.0 |
| pfu_aug2.0_46.1_20110.t1 | 1 | 1 | UvrD_C_2 | 604 | 699 | 6.0e-08 | 32.7 | 1.3e-10 | 1.9e-07 | 31.1 |
| pfu_aug2.0_46.1_20110.t1 | 5 | 5 | Viral_helicase1 | 609 | 698 | 2.9e-08 | 33.5 | 0.00031 | 0.46 | 9.9 |
| pfu_aug2.0_46.1_20110.t1 | 2 | 2 | UvrD_C | 719 | 738 | 8.4e-12 | 45.2 | 4.4 | 6500.0 | -3.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_46.1_20110.t1 | gi|676442889|ref|XP_009049943.1| | hypothetical protein LOTGIDRAFT_113635 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_46.1_20110.t1 | gi|260822334|ref|XP_002606557.1| | hypothetical protein BRAFLDRAFT_252309 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_46.1_20110.t1 | gi|697495568|ref|XP_009677593.1| | PREDICTED: F-box only protein 18 isoform X2 [Struthio camelus australis] | 0.0 |
| pfu_aug2.0_46.1_20110.t1 | gi|573891290|ref|XP_006633403.1| | PREDICTED: F-box only protein 18-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_46.1_20110.t1 | gi|584056253|ref|XP_006772685.1| | PREDICTED: F-box only protein 18 isoform X3 [Myotis davidii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_46.1_20110.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_46.1_20110.t1 atggctgtcgaggactctaattggctgacacattttcaacttctcctctgcaaccactgcatagaattttgtgaaacctt acaggaagcaagtactcaaggtcctctactacactttcttaaattcaagaagttgtattacaaactgaagagagatgtag gtgaagctagagccgatgtacaacaaatcatgtggcaaaacaagatgcagcattactctaattatttatctggtcttatc agatatgctcagcactgtcatactctacctcaatctatgacagacaatgtcacagaatgcctgaagaaacattcaaaata taactgggcagaagcattgatcaaagaaagactccctgatttacttaaagaagatgtacctaatccgtggagtatgatag cagcgttggttgtgatatcagagagtgtggccgactgtcaggagataatacggtgtttatgtctaccagaatgtcagtgt accacggtggaattactggaaaccatgtataatatcgccactctcctcttcgccttcaaactcacacacaaaaaggatgt ttggagtgggaaagctgatacaagtgtaagaatgacccatgaacaactcaggattgtcaaccacaaatgtaatccagggg agatcatcaaaattgtggcatttgcagggacagggaaaacaacaacacttgttagttacactcagcttagaccaaaccta aaatttctattggtggtttacaacaaatctgtatgtgaacatgctaagaccaaatttccttcaaacgttacttgtaagac tgggcatggcttggcatttggttatacgggaagaaaatacatgggagctgggacagggaaaacaacaacacttgttagtt acactcaacttagaccaaacctaaaatttctattagtggtttacaacaaatctgtatgtgaacatgcaaagaccaaattt ccttcgaacgtaacctgtaagactgggcacggcttggcatttggttatacgggaagaaaatacatgggagctgtaatcca tgtacctaatgaacagaatgacaacaatggcaagagggtggcagtagatcccgcaaagaaagacctatatgtacaagatg cctgctatctatggggtcgtatgaagaacttggatgataaggacgtccctatgacacatgatggttacctcaagctgtac cagctccagaaacccaaactatggggatatgactgtatactaatagatgaagctcaggatcttactccagccataacaga catactactttctcagaggcagaccaagatcctggtaggagatcctcatcaacagatttactcctttagaggagctaaaa atgccatggctcaaatctctgcctcacacgtcttttacttgactcagtcttttagatttggtccagaaatagctcaggta gcagctagttgtctggaagtgctgaagaaagtgaaagagaaaacccttgtagggaatggacaagcttgtaagataatggg agaggctgtagggcaggtggcaatattagcaaggtgtaattttactttgtttgctgaggcagtgaagaaatgctgtttct cagacaacaatgataaagtagcgtttgtagggggtacagaggggtttggattcccaatgatacaagacatatatacgttg atgctgtcggaggaggagagaagaaaagagagaagaaaaattaataacaagttcatcagtaagtttcctaaccttggtga gttagagaagtatgccaataaaactaacgacaacgaactcctggggaagatcaagattgtgagaacttatcaccatgcct taccctcacatatcaacaaaatcctggccaagtcaaccaataatcttaaaactgctgatgtattattcagcaccgcacac aaagccaaaggtttagagttcagtactgtgagacttactgatgactttaatgtggaactcattcttaaacaaaatgcagg aatcccaattccagtattggatggacaaatggaccaggtgtcagatgagggtaacttattgtatgtagcagtaaccaggg ctaagcacgcccttcagatgacggagactttactgactgttctcagagaaaatggggagagatttgaatacccagtgctg agtagctgtttagagaataaaggaattccatttaaatgcatggaaacagactccgagtttaaaccatattctctcactct agaaaaaagggaggttaaactgagctcaggaaaaacaacaccaaaaggaatatatggtcccacaattctttctgaagatg gcggcagtttctgtgagttgctaggagacaaggactcagaacaaagatcagggaaggaaaggacttcaagacaaagggac catcgttggagagtatttctggggctggatgaagatgagtttgactttgacttctatcctttctaa |
|
Protein
| Protein ID | pfu_aug2.0_46.1_20110.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_46.1_20110.t1 MAVEDSNWLTHFQLLLCNHCIEFCETLQEASTQGPLLHFLKFKKLYYKLKRDVGEARADVQQIMWQNKMQHYSNYLSGLI RYAQHCHTLPQSMTDNVTECLKKHSKYNWAEALIKERLPDLLKEDVPNPWSMIAALVVISESVADCQEIIRCLCLPECQC TTVELLETMYNIATLLFAFKLTHKKDVWSGKADTSVRMTHEQLRIVNHKCNPGEIIKIVAFAGTGKTTTLVSYTQLRPNL KFLLVVYNKSVCEHAKTKFPSNVTCKTGHGLAFGYTGRKYMGAGTGKTTTLVSYTQLRPNLKFLLVVYNKSVCEHAKTKF PSNVTCKTGHGLAFGYTGRKYMGAVIHVPNEQNDNNGKRVAVDPAKKDLYVQDACYLWGRMKNLDDKDVPMTHDGYLKLY QLQKPKLWGYDCILIDEAQDLTPAITDILLSQRQTKILVGDPHQQIYSFRGAKNAMAQISASHVFYLTQSFRFGPEIAQV AASCLEVLKKVKEKTLVGNGQACKIMGEAVGQVAILARCNFTLFAEAVKKCCFSDNNDKVAFVGGTEGFGFPMIQDIYTL MLSEEERRKERRKINNKFISKFPNLGELEKYANKTNDNELLGKIKIVRTYHHALPSHINKILAKSTNNLKTADVLFSTAH KAKGLEFSTVRLTDDFNVELILKQNAGIPIPVLDGQMDQVSDEGNLLYVAVTRAKHALQMTETLLTVLRENGERFEYPVL SSCLENKGIPFKCMETDSEFKPYSLTLEKREVKLSSGKTTPKGIYGPTILSEDGGSFCELLGDKDSEQRSGKERTSRQRD HRWRVFLGLDEDEFDFDFYPF |
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