Gene
| Gene Model ID | pfu_aug2.0_46.1_20120 |
|---|---|
| Locus | scaffold46.1 : 458661 ... 501331 : - |
| To GenomeBrowser | scaffold46.1:458661..501331 |
| Genes list of scaffold | scaffold46.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_46.1_20120.t1 | 4 | 1 | fn3 | 10 | 34 | 1.2e-23 | 82.9 | 0.46 | 3400.0 | -1.8 |
| pfu_aug2.0_46.1_20120.t1 | 4 | 2 | fn3 | 48 | 102 | 1.2e-23 | 82.9 | 3.8e-05 | 0.28 | 11.3 |
| pfu_aug2.0_46.1_20120.t1 | 4 | 3 | fn3 | 134 | 219 | 1.2e-23 | 82.9 | 3.9e-08 | 0.00029 | 20.8 |
| pfu_aug2.0_46.1_20120.t1 | 4 | 4 | fn3 | 233 | 318 | 1.2e-23 | 82.9 | 2.2e-16 | 1.6e-12 | 47.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_46.1_20120.t1 | gi|676467902|ref|XP_009058038.1| | hypothetical protein LOTGIDRAFT_153779 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_46.1_20120.t1 | gi|524889734|ref|XP_005101421.1| | PREDICTED: neuroglian-like isoform X2 [Aplysia californica] | 1.96182e-44 |
| pfu_aug2.0_46.1_20120.t1 | gi|524889732|ref|XP_005101420.1| | PREDICTED: neuroglian-like isoform X1 [Aplysia californica] | 2.00386e-43 |
| pfu_aug2.0_46.1_20120.t1 | gi|524868389|ref|XP_005090997.1| | PREDICTED: neural cell adhesion molecule L1-like protein-like [Aplysia californica] | 5.99756e-43 |
Transcript
| Transcript ID | pfu_aug2.0_46.1_20120.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_46.1_20120.t1 atgacatgggactctaactgtcctccagatccacccagaaatgtggagatattaacatgcccgggccgccatcaggcaga gttaatttgggaggacggcaataataacggagaagagataccaatgccaagaatgcttcataacggcccaggtcttagtt atgttgtcagttatagacataagggtaatacttattggaacgatgagatagtcaaagatccaaatgaaaacgaattagaa atagatgtagatgatatatatggactttatgaagtaaaagtgaaggcaaagaactcttttggtgaatcattccgaccgcc ttatagaattttgggacattccggagaagcagaaccgtcagtttcccctggagatttccgcctggacccagaaaagccag tcggtcctcacaccgcccactttatctgggaatctgtggatacgtctgaagaaaatattaatggaaaattcagaggatat atgttacggtactggaaatccagtgaaggtcgcagacattgggaagaggtgcctatacgtatagagaagttttatccctt ccaggatgtccgggcgaccgtgaatgacctcccgcccaatacagccctcagggcacaagtatctgtgatgaatgatcact acactggtcaacccagtgataccatagacttctcaacaccggaaggagttcctgggcccgtccgtagcctacgagagatg gagataaaatccaacgaagcccagttaacatggctgcctccagatgagcccaatggagaattggtgggatacgacatagg gtatcaaccagttaacgaggaaagtgagtcagtaagagccttggaaccaacaatacaaaatccctctactctaatagcta caataattgggctacagcccgaccaagagtacaggttcttcgtttgggcgaggaccaatgccggtagggggacaccagta tcaatagacgttagaacaaaaagaagaccccggatgtcgtacggaagtcctaacagtcaagttgccagtattcatcaagc tttagaaatagagatcgcgtttgttggaagtatgactaaatgttttccttaa |
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Protein
| Protein ID | pfu_aug2.0_46.1_20120.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_46.1_20120.t1 MTWDSNCPPDPPRNVEILTCPGRHQAELIWEDGNNNGEEIPMPRMLHNGPGLSYVVSYRHKGNTYWNDEIVKDPNENELE IDVDDIYGLYEVKVKAKNSFGESFRPPYRILGHSGEAEPSVSPGDFRLDPEKPVGPHTAHFIWESVDTSEENINGKFRGY MLRYWKSSEGRRHWEEVPIRIEKFYPFQDVRATVNDLPPNTALRAQVSVMNDHYTGQPSDTIDFSTPEGVPGPVRSLREM EIKSNEAQLTWLPPDEPNGELVGYDIGYQPVNEESESVRALEPTIQNPSTLIATIIGLQPDQEYRFFVWARTNAGRGTPV SIDVRTKRRPRMSYGSPNSQVASIHQALEIEIAFVGSMTKCFP |
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