Gene
| Gene Model ID | pfu_aug2.0_4618.1_29324 |
|---|---|
| Locus | scaffold4618.1 : 25126 ... 35800 : + |
| To GenomeBrowser | scaffold4618.1:25126..35800 |
| Genes list of scaffold | scaffold4618.1 |
| Synonym | pfu_aug1.0_23860.1_69593 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4618.1_29324.t1 | 2 | 1 | zf-RING_2 | 10 | 53 | 8.4e-07 | 28.7 | 7.4e-10 | 8.4e-07 | 28.7 |
| pfu_aug2.0_4618.1_29324.t1 | 2 | 1 | zf-C3HC4_4 | 11 | 52 | 3.0e-11 | 43.0 | 2.6e-14 | 3.0e-11 | 43.0 |
| pfu_aug2.0_4618.1_29324.t1 | 2 | 1 | zf-C3HC4 | 11 | 52 | 1.1e-08 | 34.5 | 9.7e-12 | 1.1e-08 | 34.5 |
| pfu_aug2.0_4618.1_29324.t1 | 2 | 1 | zf-C3HC4_2 | 11 | 52 | 2.4e-07 | 30.6 | 2.1e-10 | 2.4e-07 | 30.6 |
| pfu_aug2.0_4618.1_29324.t1 | 1 | 1 | zf-RING_UBOX | 11 | 50 | 1.1e-06 | 28.2 | 2.5e-09 | 2.8e-06 | 26.9 |
| pfu_aug2.0_4618.1_29324.t1 | 2 | 2 | zf-C3HC4 | 90 | 120 | 1.1e-08 | 34.5 | 0.35 | 400.0 | 0.7 |
| pfu_aug2.0_4618.1_29324.t1 | 2 | 2 | zf-C3HC4_2 | 90 | 118 | 2.4e-07 | 30.6 | 0.095 | 110.0 | 2.9 |
| pfu_aug2.0_4618.1_29324.t1 | 2 | 2 | zf-RING_2 | 90 | 117 | 8.4e-07 | 28.7 | 1.0 | 1200.0 | -0.6 |
| pfu_aug2.0_4618.1_29324.t1 | 2 | 2 | zf-C3HC4_4 | 107 | 118 | 3.0e-11 | 43.0 | 0.71 | 810.0 | 0.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4618.1_29324.t1 | gi|617636571|ref|XP_007530584.1| | PREDICTED: probable E3 ubiquitin-protein ligase MID2 isoform X1 [Erinaceus europaeus] | 1.0e-26 |
| pfu_aug2.0_4618.1_29324.t1 | gi|640826453|ref|XP_008070377.1| | PREDICTED: probable E3 ubiquitin-protein ligase MID2 isoform X2 [Tarsius syrichta] | 5.0e-26 |
| pfu_aug2.0_4618.1_29324.t1 | gi|472390306|ref|XP_004414466.1| | PREDICTED: probable E3 ubiquitin-protein ligase MID2 isoform X3 [Odobenus rosmarus divergens] | 7.0e-26 |
| pfu_aug2.0_4618.1_29324.t1 | gi|591378639|ref|XP_007063873.1| | PREDICTED: probable E3 ubiquitin-protein ligase MID2-like isoform X2 [Chelonia mydas] | 2.0e-25 |
Transcript
| Transcript ID | pfu_aug2.0_4618.1_29324.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4618.1_29324.t1 atggcagcggcaattagtgcagaattgacatgtccaatttgcctagagatgttcgaagatcctgtgacactggcatgtat gcattcctactgcagacactgcctggagtccattctaaagtcaagttgcggcaagatacttcgttgtccggaatgtcgat tagagaccgcaataaccaatgttgacttgcagaaaatgccaaggaacttcactcttgccaacattgttgccaaatatgaa acagaggataaagttccaaaaataccctgtgacctttgtgacgaaaaaccaccaacacatgcagtaaagagctgcaaaga atgtaagatatcgtactgtggacaatgcctgttccttcatccaaagaaaggagttcttgcgacccattctctggtagaac ctcagaacgatatgctggaagcatatgttcgcctagatgacaggaataaaaagtatgtgaaagaaacacattcggcggaa gcaaatctcaaaacgcttaagctcaaattggaagtgatcagggtgaaagggaggggcgagaggggcgggagagaggggga gggatggatgatggagggaagggagggggcgggaggagggaagaaaggaatgggaggaagaggcgtgatgttatggggcg gaatggggagtgaggtaccctctgttcgtccccttccccctcaaatagccatcacacattgtagtgaagcatttcaattc agctcagtaaagaagtctcgacgcttccatcttcagtgggataataagcatgcagaattcggtggaaataaggcaaactt gatgacagagggcgggcttcgaaaagtacgaggcggtgctatcggaactttgccattacgaggtactctacaatactggg aagtgcaggtttctttccatttccgtggagtagaacaaggggaatatgtagttgccataggaatttgtccctttggaaaa ttggatgcaatagatagccttccatgtaatttcttcttttatggaatagattttgcaaaaagcgataaaggcaggttgat tatatcaatgaaaagcgcaggtgtggaaaagaaaatagactatctgcaaccacaacggaactacagtaaacgcattggat ttctattcaatcctagacaactaaatctaacaataattgaattcgattccaatacggaaagaattctatatacaacggat acactaaagacgggaggggatttcctacaagactgtattatggagtaccaccctgtatgtgatttaaatgatgtaggaga tgctaaaattgaactattaactggttctgatatcaagtatattccaatgagcatccaacaggctttggtctcgtga |
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Protein
| Protein ID | pfu_aug2.0_4618.1_29324.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4618.1_29324.t1 MAAAISAELTCPICLEMFEDPVTLACMHSYCRHCLESILKSSCGKILRCPECRLETAITNVDLQKMPRNFTLANIVAKYE TEDKVPKIPCDLCDEKPPTHAVKSCKECKISYCGQCLFLHPKKGVLATHSLVEPQNDMLEAYVRLDDRNKKYVKETHSAE ANLKTLKLKLEVIRVKGRGERGGREGEGWMMEGREGAGGGKKGMGGRGVMLWGGMGSEVPSVRPLPPQIAITHCSEAFQF SSVKKSRRFHLQWDNKHAEFGGNKANLMTEGGLRKVRGGAIGTLPLRGTLQYWEVQVSFHFRGVEQGEYVVAIGICPFGK LDAIDSLPCNFFFYGIDFAKSDKGRLIISMKSAGVEKKIDYLQPQRNYSKRIGFLFNPRQLNLTIIEFDSNTERILYTTD TLKTGGDFLQDCIMEYHPVCDLNDVGDAKIELLTGSDIKYIPMSIQQALVS |
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