Gene
| Gene Model ID | pfu_aug2.0_4636.1_22585 |
|---|---|
| Locus | scaffold4636.1 : 11216 ... 17100 : + |
| To GenomeBrowser | scaffold4636.1:11216..17100 |
| Genes list of scaffold | scaffold4636.1 |
| Synonym | pfu_aug1.0_1723.1_37096 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| beta actin | GO:0000790 GO:0000978 GO:0000980 GO:0001895 GO:0005200 GO:0005524 GO:0005829 GO:0005886 GO:0005925 GO:0007411 GO:0014069 GO:0019894 GO:0019901 GO:0021762 GO:0030016 GO:0030424 GO:0030863 GO:0030957 GO:0031492 GO:0031941 GO:0034329 GO:0034332 GO:0035267 GO:0036464 GO:0038096 GO:0042802 GO:0043044 GO:0045087 GO:0045214 GO:0048010 GO:0048013 GO:0050998 GO:0051084 GO:0061024 GO:0070062 GO:0070527 GO:0070688 GO:0072562 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4636.1_22585.t1 | 1 | 1 | Actin | 1 | 176 | 0.0 | 202.6 | 0.0 | 0.0 | 202.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4636.1_22585.t1 | gi|641789318|ref|XP_008176497.1| | PREDICTED: actin, partial [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_4636.1_22585.t1 | gi|125995181|dbj|BAF47274.1| | 0.0 | |
| pfu_aug2.0_4636.1_22585.t1 | gi|734650121|ref|XP_010754377.1| | PREDICTED: actin, cytoplasmic-like [Larimichthys crocea] | 0.0 |
| pfu_aug2.0_4636.1_22585.t1 | gi|335353885|dbj|BAK39699.1| | beta-actin [Tursiops truncatus] | 0.0 |
| pfu_aug2.0_4636.1_22585.t1 | gi|221046110|dbj|BAH14732.1| | unnamed protein product [Homo sapiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4636.1_22585.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4636.1_22585.t1 atggaggctatctggtttcataccttctacaatgaactacatgtagcccccgaggaacaccctattctcctgactgagac tccattcaaccgaaagtttgacagagaaaagatgacagagatcatatttgaaaccttcaactgtcctgccatgtacgtag ctatccaacccgtgatgtcactgcacgcgtctggtctttctacaggtatcgtactggaatcaggggatggcgtatcacac acagtacccatctatgagggatattctcttccccacgccgtcaagagattagacttcgccggacgtgacctcacagatta tctctcaaggatccttatggagcgtggatactcattcacatccacatctgagagggaaatcgtcagagacattaaggaaa aattatgttatgttgccttggactttgaacaagaaatgactaaagccgcgtcatcatcatctgtagagaggagttacgaa cttcccgacggtcaggtcatcaccattggtaacgaaaggttcagggcatcgctgaccgtatgcagaaagaaatcacatct cttgctccatcaacaatga |
|
Protein
| Protein ID | pfu_aug2.0_4636.1_22585.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4636.1_22585.t1 MEAIWFHTFYNELHVAPEEHPILLTETPFNRKFDREKMTEIIFETFNCPAMYVAIQPVMSLHASGLSTGIVLESGDGVSH TVPIYEGYSLPHAVKRLDFAGRDLTDYLSRILMERGYSFTSTSEREIVRDIKEKLCYVALDFEQEMTKAASSSSVERSYE LPDGQVITIGNERFRASLTVCRKKSHLLLHQQ |
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