Gene
| Gene Model ID | pfu_aug2.0_464.1_14191 |
|---|---|
| Locus | scaffold464.1 : 280475 ... 308644 : - |
| To GenomeBrowser | scaffold464.1:280475..308644 |
| Genes list of scaffold | scaffold464.1 |
| Synonym | pfu_aug1.0_6324.1_24003 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_464.1_14191.t1 | 2 | 1 | TMEM173 | 258 | 427 | 3.2e-30 | 105.0 | 3.4e-21 | 1.7e-17 | 63.2 |
| pfu_aug2.0_464.1_14191.t1 | 2 | 2 | TMEM173 | 582 | 712 | 3.2e-30 | 105.0 | 8.9e-14 | 4.4e-10 | 38.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_464.1_14191.t1 | gi|156367359|ref|XP_001627385.1| | predicted protein [Nematostella vectensis] | 2.0e-11 |
| pfu_aug2.0_464.1_14191.t1 | gi|706106964|ref|XP_010206132.1| | PREDICTED: stimulator of interferon genes protein, partial [Colius striatus] | 6.0e-09 |
| pfu_aug2.0_464.1_14191.t1 | gi|694833405|ref|XP_009474097.1| | PREDICTED: stimulator of interferon genes protein [Nipponia nippon] | 2.0e-08 |
| pfu_aug2.0_464.1_14191.t1 | gi|704314741|ref|XP_010167112.1| | PREDICTED: stimulator of interferon genes protein, partial [Caprimulgus carolinensis] | 3.0e-08 |
| pfu_aug2.0_464.1_14191.t1 | gi|704278271|ref|XP_010156112.1| | PREDICTED: stimulator of interferon genes protein, partial [Eurypyga helias] | 4.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_464.1_14191.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_464.1_14191.t1 atgatttatttcgggatttacctggttctgatagctgtatcatacaatatcctttccgaagcatacgctatttctgtttg gaactgcccatgttcaaaagagaagtgggaagagcggtcacgtgcctttaattgtgaggaaaagacatacacatgtattc ttaacaaagacggaaagttgatggaaacatgcataatcccatatacatttgacagtgatgaagttggatgtccttttgtt cagcaagtcatgcctgacgtaggagcactgatcggtataaagcacacttggtgtaatgttactggatgtccattacttgg tcatcatagatatggaatcaatgaaatgtataaattgccatggcgaccatatcagggaaaatattcaaaacacttactgt caacccctcgcggggaactattttacgagcaacacggcaaagggcataaatgtgacacaaatgagttaaagaatatcctg acgataatctcaatagcactcacaatagaaaaccaaactgagcatcgatggacccctagcaagctagaggtgggatcagg tgcctgggaggagggcgacttgacagacaaagacaccgtgtgtgcaccagaatcagaatttacaacaaattctccaaaag tacatgataacaaggatgacagtcctcccatttctctcatagtcggtctccttgttcttatattggtagcagcattaatt gcggtttcatttgttgtttttcggaaaaggcgccattgtcttatggggagctctgaagctagtacaacgtcccaagaata taccaattttgcaacaggtttggcatggtcacactacacaggatatctgaagacattactaccagctctcaacaaagcaa tcaaagattcagaaacttacaaagctcatccagagcggacgaagtttacatgggtaatgctttgtcctcgatctgcgaca agtactgaccttacacagactcgttcaatgaaactggttgagacaattccagttcctgagacatattttaaagtcaacat gtatgagatcaaaactaaagaaagtgaagagccttggtattgttgcatggaatatcccagtgccttgatgtcactcggaa accaatcagaaagtcttagtccagaaaaggtgtcattagaagttaaacgattctcatactacatcatgaatattctcaat cacgaggggaatacggaatgcaaggggaaagccgttgcgttgttttacgatgaaacacagacatcagtatcagaggagtt agcgtttaaagtatttgatgacaaacatatagaggaagaagagaataccagtatctgcctcctcaaaacacgacaaaatg agagattattggaaaagacatatcatgaattagagaagtcattatcaacgaataaacgaaacacctttactgcaaacctt ctgaatgacgataaaagaatcattgttaaggctctcagtgaagcacaatggataattctgtacggcgttaaccgcaaaat cccttcttcatacaagtggctccttggtattctttcccagcgtgttgaggaagaaaaatgtaaggtattatgtttattcg ctggagcatgtgaggagagaacaacacgatttatcccattaactgtagcaatggacttggaaaaggacgacaatatagta gcgcaggtcaaaagtattgtgttgggtctgcctcccgtaacatcatcagacattgtatatggcgatgtatcctttgggat atcctggtcgttttatggaaactacctacggcacgttctcccagatttgcatcagcgccttggagttgccgtggaatctg aaatgaaaaagatgaatctaggtaaaaccgacgtgaggctatcaaaaagactgttggagattgtgccaacttcatgcact tttcgagtgctttcagaatttgacgacagaatacatggaccaatcaaagtggagccgcttcagaaaagtctatatgaaac tgaacgcgtttaccaagcaaacatgtattattttcagaatggacataccacgtatttctttttgggagaggtgttttccc cttgcaaggttctgaaggcaatgagagagagcagtctcgtacaattatcggagaaacagtttaatcagttaagaggcaga atgattgatcagacgaaatcggttattgcaacatttcaaaacaagtacagtgacggagttcatactgacatagttcagtt taaagaaggaggatctcaatctcttagtgacatgatcttcggcctaatttcaaacgagacgacatctacagagaaccaaa atgaatattcagagatggacaatcttattggcgttacccactatgtgaatgcagataactga |
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Protein
| Protein ID | pfu_aug2.0_464.1_14191.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_464.1_14191.t1 MIYFGIYLVLIAVSYNILSEAYAISVWNCPCSKEKWEERSRAFNCEEKTYTCILNKDGKLMETCIIPYTFDSDEVGCPFV QQVMPDVGALIGIKHTWCNVTGCPLLGHHRYGINEMYKLPWRPYQGKYSKHLLSTPRGELFYEQHGKGHKCDTNELKNIL TIISIALTIENQTEHRWTPSKLEVGSGAWEEGDLTDKDTVCAPESEFTTNSPKVHDNKDDSPPISLIVGLLVLILVAALI AVSFVVFRKRRHCLMGSSEASTTSQEYTNFATGLAWSHYTGYLKTLLPALNKAIKDSETYKAHPERTKFTWVMLCPRSAT STDLTQTRSMKLVETIPVPETYFKVNMYEIKTKESEEPWYCCMEYPSALMSLGNQSESLSPEKVSLEVKRFSYYIMNILN HEGNTECKGKAVALFYDETQTSVSEELAFKVFDDKHIEEEENTSICLLKTRQNERLLEKTYHELEKSLSTNKRNTFTANL LNDDKRIIVKALSEAQWIILYGVNRKIPSSYKWLLGILSQRVEEEKCKVLCLFAGACEERTTRFIPLTVAMDLEKDDNIV AQVKSIVLGLPPVTSSDIVYGDVSFGISWSFYGNYLRHVLPDLHQRLGVAVESEMKKMNLGKTDVRLSKRLLEIVPTSCT FRVLSEFDDRIHGPIKVEPLQKSLYETERVYQANMYYFQNGHTTYFFLGEVFSPCKVLKAMRESSLVQLSEKQFNQLRGR MIDQTKSVIATFQNKYSDGVHTDIVQFKEGGSQSLSDMIFGLISNETTSTENQNEYSEMDNLIGVTHYVNADN |
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