Gene
| Gene Model ID | pfu_aug2.0_4655.1_19342 |
|---|---|
| Locus | scaffold4655.1 : 15448 ... 35205 : - |
| To GenomeBrowser | scaffold4655.1:15448..35205 |
| Genes list of scaffold | scaffold4655.1 |
| Synonym | pfu_aug1.0_4640.1_16456 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4655.1_19342.t2 | 2 | 1 | CBM_20 | 9 | 49 | 4.1e-08 | 32.7 | 5.2e-11 | 3.8e-07 | 29.6 |
| pfu_aug2.0_4655.1_19342.t2 | 2 | 2 | CBM_20 | 243 | 270 | 4.1e-08 | 32.7 | 0.54 | 4000.0 | -2.6 |
| pfu_aug2.0_4655.1_19342.t2 | 1 | 1 | GDPD | 344 | 429 | 1.5e-24 | 86.9 | 3.1e-28 | 2.3e-24 | 86.3 |
Transcript
| Transcript ID | pfu_aug2.0_4655.1_19342.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4655.1_19342.t1 atgtctttaatgtccataacatatgaagtggtatttatggtgcgtgtggaagttgaaccagatgaagtcgtatgtgtagt aggggactgtactgctctcgggaactggaatccacatcacgctgtaaagctacaccgggaatctagccccagactacaga gaaaaggacccgagcagaaagatgatgctgcaccccatagagatatatggaagaaaaaagtcaagttacatgggacgtgt ggtatgagagactttcagtaccgttactttgtgtgtaagattcgtgactctgacagtgaggagtctgatcgctatgtcaa ggtcatttgctgggaaacgaaccttaaaccaagagtgttttcacctgcagattttatgcagaatcctaccaagtatgatg ataaggagattgccatgtttggtgactatggaggtaaaagtctcatttcattaggatggttaactgaccaatcagaaatc catatacgcttcactgacaaccccattcacatgtggaaacctaagtatcgtaaacagacgtacagtatcaagtgtacacc tctagaccaacgatataaagatcatttagatgaagatgaggaggaggaagattggggtacacataactcaccgccttcta cattcaccaaagtgctcgtttctgttctgaatgaagaacactgtgtacctgtagtgcagtctcagtttggtacaatatac aacaaagatgactatatgatatttacagctcaaacacctgaaccagaaagcttgggttttcagtttgatttctatgtgag ggagccagacatggagcccaagcatataggatactgctatctcttgccaattgatctaacaaagtgcaacgatgtaaaga aagtgccaattacaggcctaaggcataaacctataggccaagtcagattggactatttaatagccaaaccagtaccaggt ctcaatatgaatatggaggtatcatatagaaattactggaagtttgagagagggtcattagacgtggggcatcgaggaat gggctcatcatacaaacataaaaagctggaggcagtgagagaaaatacagtagaatccctccagaaagcgggtagtcatg gtgctgattatgtggagtttgatgttcagttaagcaaggacttgatacccatcatttatcatgattttgacgtggcactt acataccgcaagaaaaagcatgatgagctggaatacttcaagttaccagtaaaagatctaacgttggcggaacttcaaca gatgaagattttcatgaaacttggtttgtacaaggtactcatggcctctaccagtgttgttgtttttgtccagatgggtc aacaggtggggccattacagatagaagaagatctcagtggttactctcctttgacaaacttcttcagaatcaaagcacga aacaggaggatagtgttctccagttttgacccagacacatgtgttttattacaactgaagcagaacaaatacccagtgct cttcctgaccaatggagaacaagattattatgtaccttacaaggactatagaaccaagacgatgatgcgtgccgtgtatt ttgctaaattttcaaatttattgggcatagatgttttcactaagtgtctgttacaaaacgtagaccttatacctgccgtg aagaaggcaggcttggtactgttttgttggggagaggataataacagttcaaatgtgataaacacactgcggcagcacgg agtagacggcattatatatgacagaatcttgcttaatatggaaatgtatggagatactccagtgtttgaagtccctccag attgtgaatgcattcataaacacctgtgtcgatgcaactcctctgaggaggaaggcacagggttgtcatgaattgacgag ttcaagtctacaaagaaaagcgtcttcaaactggagagggacgtgaagcatcagttactagctcagttaggggtcgtctc accattacgtaatggcctatctaacgacacagactcagacattagtgatgtcaatagctga |
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| Transcript ID | pfu_aug2.0_4655.1_19342.t2 |
| Definition | - |
>pfu_aug2.0_4655.1_19342.t2 atgtctttaatgtccataacatatgaagtggtatttatggtgcgtgtggaagttgaaccagatgaagtcgtatgtgtagt aggggactgtactgctctcgggaactggaatccacatcacgctgtaaagctacaccgggaatctagccccagactacaga gaaaaggacccgagcagaaagatgatgctgcaccccatagagatatatggaagaaaaaagtcaagttacatgggacgtgt ggtatgagagactttcagtaccgttactttgtgtgtaagattcgtgactctgacagtgaggagtctgatcgctatgtcaa ggtcatttgctgggaaacgaaccttaaaccaagagtgttttcacctgcagattttatgcagaatcctaccaagtatgatg ataaggagattgccatgtttggtgactatggaggtaaaagtctcatttcattaggatggttaactgaccaatcagaaatc catatacgcttcactgacaaccccattcacatgtggaaacctaagtatcgtaaacagacgtacagtatcaagtgtacacc tctagaccaacgatataaagatcatttagatgaagatgaggaggaggaagattggggtacacataactcaccgccttcta cattcaccaaagtgctcgtttctgttctgaatgaagaacactgtgtacctgtagtgcagtctcagtttggtacaatatac aacaaagatgactatatgatatttacagctcaaacacctgaaccagaaagcttgggttttcagtttgatttctatgtgag ggagccagacatggagcccaagcatataggatactgctatctcttgccaattgatctaacaaagtgcaacgatgtaaaga aagtgccaattacaggcctaaggcataaacctataggccaagtcagattggactatttaatagccaaaccagtaccaggt ctcaatatgaatatggaggtatcatatagaaattactggaagtttgagagagggtcattagacgtggggcatcgaggaat gggctcatcatacaaacataaaaagctggaggcagtgagagaaaatacagtagaatccctccagaaagcgggtagtcatg gtgctgattatgtggagtttgatgttcagttaagcaaggacttgatacccatcatttatcatgattttgacgtggcactt acataccgcaagaaaaagcatgatgagctggaatacttcaagttaccagtaaaagatctaacgttggcggaacttcaaca gatgaagatcatgccacagatacatatagctacagatcaagctacatctatattacgcatcagtagctatccgagtggtg cgagtcgctacgtgtacatgtacatgtatcagtag |
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Protein
| Protein ID | pfu_aug2.0_4655.1_19342.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4655.1_19342.t1 MSLMSITYEVVFMVRVEVEPDEVVCVVGDCTALGNWNPHHAVKLHRESSPRLQRKGPEQKDDAAPHRDIWKKKVKLHGTC GMRDFQYRYFVCKIRDSDSEESDRYVKVICWETNLKPRVFSPADFMQNPTKYDDKEIAMFGDYGGKSLISLGWLTDQSEI HIRFTDNPIHMWKPKYRKQTYSIKCTPLDQRYKDHLDEDEEEEDWGTHNSPPSTFTKVLVSVLNEEHCVPVVQSQFGTIY NKDDYMIFTAQTPEPESLGFQFDFYVREPDMEPKHIGYCYLLPIDLTKCNDVKKVPITGLRHKPIGQVRLDYLIAKPVPG LNMNMEVSYRNYWKFERGSLDVGHRGMGSSYKHKKLEAVRENTVESLQKAGSHGADYVEFDVQLSKDLIPIIYHDFDVAL TYRKKKHDELEYFKLPVKDLTLAELQQMKIFMKLGLYKVLMASTSVVVFVQMGQQVGPLQIEEDLSGYSPLTNFFRIKAR NRRIVFSSFDPDTCVLLQLKQNKYPVLFLTNGEQDYYVPYKDYRTKTMMRAVYFAKFSNLLGIDVFTKCLLQNVDLIPAV KKAGLVLFCWGEDNNSSNVINTLRQHGVDGIIYDRILLNMEMYGDTPVFEVPPDCECIHKHLCRCNSSEEEGTGLSXIDE FKSTKKSVFKLERDVKHQLLAQLGVVSPLRNGLSNDTDSDISDVNS |
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| Protein ID | pfu_aug2.0_4655.1_19342.t2 |
| Definition | - |
>pfu_aug2.0_4655.1_19342.t2 MSLMSITYEVVFMVRVEVEPDEVVCVVGDCTALGNWNPHHAVKLHRESSPRLQRKGPEQKDDAAPHRDIWKKKVKLHGTC GMRDFQYRYFVCKIRDSDSEESDRYVKVICWETNLKPRVFSPADFMQNPTKYDDKEIAMFGDYGGKSLISLGWLTDQSEI HIRFTDNPIHMWKPKYRKQTYSIKCTPLDQRYKDHLDEDEEEEDWGTHNSPPSTFTKVLVSVLNEEHCVPVVQSQFGTIY NKDDYMIFTAQTPEPESLGFQFDFYVREPDMEPKHIGYCYLLPIDLTKCNDVKKVPITGLRHKPIGQVRLDYLIAKPVPG LNMNMEVSYRNYWKFERGSLDVGHRGMGSSYKHKKLEAVRENTVESLQKAGSHGADYVEFDVQLSKDLIPIIYHDFDVAL TYRKKKHDELEYFKLPVKDLTLAELQQMKIMPQIHIATDQATSILRISSYPSGASRYVYMYMYQ |
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