Gene
| Gene Model ID | pfu_aug2.0_4661.1_06026 |
|---|---|
| Locus | scaffold4661.1 : 1 ... 45567 : + |
| To GenomeBrowser | scaffold4661.1:1..45567 |
| Genes list of scaffold | scaffold4661.1 |
| Synonym | pfu_aug1.0_2390.1_51655 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4661.1_06026.t1 | 4 | 1 | DUF1162 | 518 | 540 | 0.0 | 290.1 | 0.097 | 720.0 | -0.9 |
| pfu_aug2.0_4661.1_06026.t1 | 4 | 2 | DUF1162 | 567 | 725 | 0.0 | 290.1 | 0.0041 | 30.0 | 3.6 |
| pfu_aug2.0_4661.1_06026.t1 | 4 | 3 | DUF1162 | 831 | 888 | 0.0 | 290.1 | 0.0063 | 47.0 | 3.0 |
| pfu_aug2.0_4661.1_06026.t1 | 4 | 4 | DUF1162 | 932 | 1216 | 0.0 | 290.1 | 0.0 | 0.0 | 277.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4661.1_06026.t1 | gi|727043500|ref|XP_010404093.1| | PREDICTED: vacuolar protein sorting-associated protein 13D isoform X3 [Corvus cornix cornix] | 0.0 |
| pfu_aug2.0_4661.1_06026.t1 | gi|727043497|ref|XP_010404092.1| | PREDICTED: vacuolar protein sorting-associated protein 13D isoform X2 [Corvus cornix cornix] | 0.0 |
| pfu_aug2.0_4661.1_06026.t1 | gi|727043493|ref|XP_010404091.1| | PREDICTED: vacuolar protein sorting-associated protein 13D isoform X1 [Corvus cornix cornix] | 0.0 |
| pfu_aug2.0_4661.1_06026.t1 | gi|641759026|ref|XP_008165434.1| | PREDICTED: vacuolar protein sorting-associated protein 13D isoform X2 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_4661.1_06026.t1 | gi|698399105|ref|XP_009808321.1| | PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13D [Gavia stellata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4661.1_06026.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4661.1_06026.t1 actgtattgagtggaaagacgtggcaagtagagctgttgatttcccacccccagggaccagaatgtccggaggcatccct ggccaagctggactttatctgctcgacactcaagtttgattcgtattctgattcctccaaggatgttgatctggtgtcca atgaaattgttgccagtgataccagatacagagatgctccagtgaatgtccgtccaaacatgtttgagaagatattacag ccaggtccccgtaggaacagatccgatattttccagttggagttacattacagactgacgcgtgatgctaatcgtttctc tgtcatacttaacaacatgaagctgatgtgtatttttgattggctactgactgtacaggagttcatcatgactggcccag ataatccattcaaacaagaccaggaggacatagcggaggcggtagatagcggtactcagcaggatacagagtctatagga tctaatggttctcgtacaacaagtcctgttaccatatccagtggtatcatgacaaagaggggacctattgtagaagagag tacagccatacttaacttccgcccaaaagcccaggacaagatactatcctgtacccttcagtccatagaggtgttttctt gttccctattggctgaggaggagacggcattatccattattgacccgctaacaatacatattgacctcaatgccaatcct ttgcctgaaccaaaactttcttcctctactggcctgttagaagcctcaaaagtacaggagaggaatttacaacttgaagt agcgtttaacgtgatgaacattcgtttgtcgtaccatgatatgaacatgttcttagcaatactgaactccttacctgaac aagctctcaaggcagcgaacagagaatctcagaaagtcaaatctaaatatccagaaaacaaaatcatccctctcagagat cttggatttggtctgaaggattgtgagaaagctttggagacaaacgatatgaacctggaagcagcggccatctggttaac aacacacggcactcccctacccaaggccaagagggagtccaaaaaacagtctaaggaagggggattaactctcaccggca tggagctgaagtcttcctgtatctcactatgtttgattgatgactgtggcgactcagatgtacctttagcagagctcgac tttaacaacatccaggtcaatcagaagctcttacctgtaaaagagggccgagcattgttcagtctgactggagatttcta caatagaagtttgtcaggctgggaaccatttttagagcaatggagatgtcattgtgaatggaagcaagtacataacaagg gagaaaagaaaacatcattccaggtcaatgcccctgatgtactgaatttgaatataaccagtgctatactggagcagtac aacaaaactaaacagacgtggtcagaggattactacagacaaaaaacaccagctaactcccagaggagtgtaacatctag tccttcctccccacagaggagacgtgtaccatttgtaccgtttatgcttcacaatcagacaggatgtacactatggtttg ccacggttaccaccacagccatcaggccagctaattctcagaggagtgtaacatctagcctctcctccccacagaggaga agtgtaccgtttgtactgtttatgcttcacaatcagacaggatgtacactattgtttgccactgttaccaccactactat cagacatggtcagaaaccccacaaggacatcaatcaagagggtcacatcaaggcatcagagtggaaaaaagtggcagcca atgagaaaatgcctttcatgttccaacggaaagagaaaataagacatcagaaaacccatgatcttcgaatcaaccagctg gtggtgaaggtggatggatggcagaaacttaacagtgttacggtagataaagtgggtgtgtacttcagacatgctgacgc tgataagaaacaagctacaggattggccagcctgacttatgcctcttcccatgaccctgagaaacaacagaaagctcgtg tagtatttgatgtccaacaggagggaagtgctaggaaagtcataactgtacgatctgcactcattatcaggaataggcta gacagtgatgtagaactcaaaatggcatctggcagtaaacttgatggaaagtttaatatcatggaaattcctgcaggaaa cagcttttccattcctctaccctacatcaactacttgttttatgtcagaccgtctgattggccagttcgttattcgtctg agccaatccaatggaggcatgtaggtctacaaggacagatcaaagataaaacatttaaatgtgaaacaagtgattcatcg ggaggggtttataggttttgtgcttctgtgagaagggagagctatccagagcaggttcagacagacgagaacgtagagat aattcccggccatactattacacttctccctcctgtggtcatacacaacctgttacccatcgacatgcgatactacataa aaaattcggaaatttcagggtcaatacgacctggaaaaacagcctccttacatgctgctgaccctcagagtgatctggaa cttggtgtgaacctggagaatttcctcagctgtcgagaactactgatcccaccagatacaatattctacaaagtcaaact acggctgtttgaccagaaacagagattactagaactcgtggtgaagattatctctagaatgggaggctcggttaatctgt atattctggctccttattggctggttaacaagtcagggctccccctggtgttcagtcaggattcagccactcaggagatg gcggggcagtttgaggagcatgaactcgcccgtagtgttactccattattgttctcatatgctgaaagggagctacctga aatgtgttccatgagagttggaagatctgtcaagggacctaactctgttcccatctggtgtacaagattttccttggagc aaggaatcggtatgcgacggttgacagtggttcccagagaaaagaatcgacctgattggatatacaatattggcatcaag gttgaaaaagggaatggaaaatacaaggagaccaatatagtgacctttgctccactttatgaacttgacaataaatctag tcataaacttgctgtggcacagagacatattgctctcggagaggaatcaagaatcgatggacatttaacagtgcttccac aatgtaagctgccttttcattggccgagacttgacctggatcagttgttatgtgtcatgctattggagaataaagtcacc aattggtcaggaggattcaggattgaccagacctgttctttccatattaatatgagggatgacagtggacataacaattt actgagggtagaggttgtcaagcatggccctacgttctttattgtgtttggcgatgcagaaggaatgcccccaccattca ggatagataacctatctgaggtccaaatacagtactgccagaagcaaggggagaatatgaggggaaacaagcaggcctgg atcaggcctcatacccaagtaccatatgcctgggatgagcccacactagaccacattataaccctcaaagtccagagtgg ctcagacgcctcctacaacatggatcagctcggggaaggcccacaactctgttactccaatctcatctacctggccgcaa caaccacctttagcagaaatgttagtgaagatagacagaacttagtactggaagtagttgagagcaactatctcaaattc atgcctaaggagaagagtaagcgtagtcagttatggcggatgacgagtcagggaatgctggaacatgagggaagtatggc tcccagggacccccgtagaggggcgtcatccacacgtagcctggtactggacatagacgatatagctctacagccagata aaatcgtccctctgacgctacggaagcctgacgagaggagacggtccacgcaaacctggatattcactcaggacggcaag ctgtgttccagtgtaggtgtattgtgtgtacaggtgttgggtggggagtcctgcctgttggcccaggctgtggctgtttt aggcccctgtcccacggactcggagaagcgtataccaccacacatgcagatcactcgacagaaactgatgccgggatctg gatgtctgtcagtcagaatcgccatggatggaccaatcagagtgctacaaatcactgatatttcccagaggggtcatcca cattctgcaaaagtttgtctcagtgaatatgaataccgtatgaccagaaattttcgcaattttatgcaaattgtgaaaca agtaatatcaaagaaatatgatgactgggctatatatgatgaaagaacaaagaatgatgaagaaatggacatccctgaac tgtcaagtctagagttaaacatgagtctcaaaggaggatttggtatttcattgatcaacaaggtgccgcaagaattagtg tacatcacactaggaaatatacaggtggactacgtctcccgtcctaactctgtcactgtggacgtagtggtggggagtgt acagggattcctcactggcatcggtaaaggtgtagttggcacggtaaccaagcctgttgcaggtgtccttgaccttgcct caggggcggccaatgccttgaaggacacaagtgcaagtagttctaagatgggtcccccgagggtgaggagaccacggtgc tgtcatggtccagggagactgttacaggcctataacaaaggacaggccaagtcacaggagctactccataaactcaacag gaataggcatagtgaatattttatagcattagaacagctgcggtcaggtaaggaggacagtctgttagccatgatcacca gttctcaggtttcccagcagatcaattatgcgttcaatctttatgatgaacgacaacacacgctgatcgatgagaatggt ggtcaggaagatgtcggaacataa |
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Protein
| Protein ID | pfu_aug2.0_4661.1_06026.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4661.1_06026.t1 TVLSGKTWQVELLISHPQGPECPEASLAKLDFICSTLKFDSYSDSSKDVDLVSNEIVASDTRYRDAPVNVRPNMFEKILQ PGPRRNRSDIFQLELHYRLTRDANRFSVILNNMKLMCIFDWLLTVQEFIMTGPDNPFKQDQEDIAEAVDSGTQQDTESIG SNGSRTTSPVTISSGIMTKRGPIVEESTAILNFRPKAQDKILSCTLQSIEVFSCSLLAEEETALSIIDPLTIHIDLNANP LPEPKLSSSTGLLEASKVQERNLQLEVAFNVMNIRLSYHDMNMFLAILNSLPEQALKAANRESQKVKSKYPENKIIPLRD LGFGLKDCEKALETNDMNLEAAAIWLTTHGTPLPKAKRESKKQSKEGGLTLTGMELKSSCISLCLIDDCGDSDVPLAELD FNNIQVNQKLLPVKEGRALFSLTGDFYNRSLSGWEPFLEQWRCHCEWKQVHNKGEKKTSFQVNAPDVLNLNITSAILEQY NKTKQTWSEDYYRQKTPANSQRSVTSSPSSPQRRRVPFVPFMLHNQTGCTLWFATVTTTAIRPANSQRSVTSSLSSPQRR SVPFVLFMLHNQTGCTLLFATVTTTTIRHGQKPHKDINQEGHIKASEWKKVAANEKMPFMFQRKEKIRHQKTHDLRINQL VVKVDGWQKLNSVTVDKVGVYFRHADADKKQATGLASLTYASSHDPEKQQKARVVFDVQQEGSARKVITVRSALIIRNRL DSDVELKMASGSKLDGKFNIMEIPAGNSFSIPLPYINYLFYVRPSDWPVRYSSEPIQWRHVGLQGQIKDKTFKCETSDSS GGVYRFCASVRRESYPEQVQTDENVEIIPGHTITLLPPVVIHNLLPIDMRYYIKNSEISGSIRPGKTASLHAADPQSDLE LGVNLENFLSCRELLIPPDTIFYKVKLRLFDQKQRLLELVVKIISRMGGSVNLYILAPYWLVNKSGLPLVFSQDSATQEM AGQFEEHELARSVTPLLFSYAERELPEMCSMRVGRSVKGPNSVPIWCTRFSLEQGIGMRRLTVVPREKNRPDWIYNIGIK VEKGNGKYKETNIVTFAPLYELDNKSSHKLAVAQRHIALGEESRIDGHLTVLPQCKLPFHWPRLDLDQLLCVMLLENKVT NWSGGFRIDQTCSFHINMRDDSGHNNLLRVEVVKHGPTFFIVFGDAEGMPPPFRIDNLSEVQIQYCQKQGENMRGNKQAW IRPHTQVPYAWDEPTLDHIITLKVQSGSDASYNMDQLGEGPQLCYSNLIYLAATTTFSRNVSEDRQNLVLEVVESNYLKF MPKEKSKRSQLWRMTSQGMLEHEGSMAPRDPRRGASSTRSLVLDIDDIALQPDKIVPLTLRKPDERRRSTQTWIFTQDGK LCSSVGVLCVQVLGGESCLLAQAVAVLGPCPTDSEKRIPPHMQITRQKLMPGSGCLSVRIAMDGPIRVLQITDISQRGHP HSAKVCLSEYEYRMTRNFRNFMQIVKQVISKKYDDWAIYDERTKNDEEMDIPELSSLELNMSLKGGFGISLINKVPQELV YITLGNIQVDYVSRPNSVTVDVVVGSVQGFLTGIGKGVVGTVTKPVAGVLDLASGAANALKDTSASSSKMGPPRVRRPRC CHGPGRLLQAYNKGQAKSQELLHKLNRNRHSEYFIALEQLRSGKEDSLLAMITSSQVSQQINYAFNLYDERQHTLIDENG GQEDVGT |
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