Gene
| Gene Model ID | pfu_aug2.0_47.1_23318 |
|---|---|
| Locus | scaffold47.1 : 104696 ... 140400 : + |
| To GenomeBrowser | scaffold47.1:104696..140400 |
| Genes list of scaffold | scaffold47.1 |
| Synonym | pfu_aug1.0_1835.1_37140 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_47.1_23318.t2 | 1 | 1 | RVT_1 | 39 | 174 | 2.1e-13 | 50.1 | 6.2e-17 | 3.0e-13 | 49.6 |
Transcript
| Transcript ID | pfu_aug2.0_47.1_23318.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_47.1_23318.t1 atgctgttgtctatccctgggaaagtatcaattttgtcaagaattatactggagagatcctacacagaccatattgccac catgcgtatattaattgaacggtccttagaggggcagactcccctctacactgtctttgtttacttccagaaggcgttcg acagtgttgacggacatgtcatcttgagtctgatgcttcactacggctttccaccaaagtttgtcgacatcattttgcaa ctatacaaggatgccacgtgtcaagttatccatgatgggaaactgacagagcccttctctgtgaaaactggggttcgtca gggttgtttgctattatcaccgacaattttcctgatggtggtcgactgggtcatgcgacagtccacggctgacaagaaga ccggtatccagtggacctttacaaaacatctggtgaatctggattttgcggacgacatcagtctactcacacaagcagca agacgcatgtggatcaaggtttgggaatttctgacatttatcctatggtccgcaatgacttggaagaaaaactatggtag cctgtgtatatcgtatgaaacggaatcacctactcagagcgcaccaaatttcctgcagggtcgattcgctccaaagaaca tagatgtatcagatcctaagtcatgtatcgatgattcacaattgagtggacgctatgaatgcgagtttaatatggaactc gagatacccgtaggatacatcaaaccggaatgtgtgtgcccatcttaccttttctaccctgatatatatgatcatccagt ctgcatgaatggaatgcatataataacatgtcaagattgtaagaagtacagcttgaatcaaagaggtccgtgtctaaaca atggtacatttagatgtaaggaccgtcaattagctaaggacatcaaatgtagttgcccggaaggctacagtggctactat tgtcaaacaattaagagggtctgtgagccacaaaggaagtgttgtaggtcgtataaaataggagacagcagtatcgacac aaactgttccagaaactacacacagagctgcccggaatattccatttcagacgagactacttccggaaagagttgtgttc tttgtttaagcagtttttatactttatcagttagtgctgttgtgatgtattttatccatggactaagttga |
|
| Transcript ID | pfu_aug2.0_47.1_23318.t2 |
| Definition | - |
>pfu_aug2.0_47.1_23318.t2 atgctgttgtctatccctgggaaagtatcaattttgtcaagaattatactggagagatcctacacagaccatattgccac catgcgtatattaattgaacggtccttagaggggcagactcccctctacactgtctttgtttacttccagaaggcgttcg acagtgttgacggacatgtcatcttgagtctgatgcttcactacggctttccaccaaagtttgtcgacatcattttgcaa ctatacaaggatgccacgtgtcaagttatccatgatgggaaactgacagagcccttctctgtgaaaactggggttcgtca gggttgtttgctattatcaccgacaattttcctgatggtggtcgactgggtcatgcgacagtccacggctgacaagaaga ccggtatccagtggacctttacaaaacatctggtgaatctggattttgcggacgacatcagtctactcacacaagcagca agacgcatgtggatcaaggtttgggaatttctgacatttatcctatggtccgcaatgacttggaagaaaaactatggtag cctgtgtatatcgtatgaaacggaatcacctactcctccaaagaacatagatgtatcagatcctaagtcatgtatcgatg attcacaattgagtggacgctatgaatgcgagtttaatatggaactcgagatacccgtaggatacatcaaaccggaatgt gtgtgcccatcttaccttttctaccctgatatatatgatcatccagtctgcatgaatggaatgcatataataacatgtca agattgtaagaagtacagcttgaatcaaagaggtccgtgtctaaacaatggtacatttagatgtaaggaccgtcaattag ctaaggacatcaaatgtagttgcccggaaggctacagtggctactattgtcaaacaattaagagggtctgtgagccacaa aggaagtgttgtaggtcgtataaaataggagacagcagtatcgacacaaactgttccagaaactacacacagagctgccc ggaatattccatttcagacgagactacttccggaaagagttgtgttctttgtttaagcagtttttatactttatcagtta gtgctgttgtgatgtattttatccatggactaagttga |
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Protein
| Protein ID | pfu_aug2.0_47.1_23318.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_47.1_23318.t1 MLLSIPGKVSILSRIILERSYTDHIATMRILIERSLEGQTPLYTVFVYFQKAFDSVDGHVILSLMLHYGFPPKFVDIILQ LYKDATCQVIHDGKLTEPFSVKTGVRQGCLLLSPTIFLMVVDWVMRQSTADKKTGIQWTFTKHLVNLDFADDISLLTQAA RRMWIKVWEFLTFILWSAMTWKKNYGSLCISYETESPTQSAPNFLQGRFAPKNIDVSDPKSCIDDSQLSGRYECEFNMEL EIPVGYIKPECVCPSYLFYPDIYDHPVCMNGMHIITCQDCKKYSLNQRGPCLNNGTFRCKDRQLAKDIKCSCPEGYSGYY CQTIKRVCEPQRKCCRSYKIGDSSIDTNCSRNYTQSCPEYSISDETTSGKSCVLCLSSFYTLSVSAVVMYFIHGLS |
|
| Protein ID | pfu_aug2.0_47.1_23318.t2 |
| Definition | - |
>pfu_aug2.0_47.1_23318.t2 MLLSIPGKVSILSRIILERSYTDHIATMRILIERSLEGQTPLYTVFVYFQKAFDSVDGHVILSLMLHYGFPPKFVDIILQ LYKDATCQVIHDGKLTEPFSVKTGVRQGCLLLSPTIFLMVVDWVMRQSTADKKTGIQWTFTKHLVNLDFADDISLLTQAA RRMWIKVWEFLTFILWSAMTWKKNYGSLCISYETESPTPPKNIDVSDPKSCIDDSQLSGRYECEFNMELEIPVGYIKPEC VCPSYLFYPDIYDHPVCMNGMHIITCQDCKKYSLNQRGPCLNNGTFRCKDRQLAKDIKCSCPEGYSGYYCQTIKRVCEPQ RKCCRSYKIGDSSIDTNCSRNYTQSCPEYSISDETTSGKSCVLCLSSFYTLSVSAVVMYFIHGLS |
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