Gene
| Gene Model ID | pfu_aug2.0_47.1_23320 |
|---|---|
| Locus | scaffold47.1 : 170996 ... 186537 : + |
| To GenomeBrowser | scaffold47.1:170996..186537 |
| Genes list of scaffold | scaffold47.1 |
| Synonym | pfu_aug1.0_1835.1_37142 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tumor susceptibility gene 101 protein isoform x2 | GO:0000813 GO:0001558 GO:0003714 GO:0005730 GO:0005769 GO:0005770 GO:0005886 GO:0006513 GO:0007050 GO:0008285 GO:0008333 GO:0030216 GO:0030374 GO:0031625 GO:0042803 GO:0043130 GO:0043162 GO:0045892 GO:0046755 GO:0048306 GO:0070062 GO:1903543 GO:1903551 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_47.1_23320.t1 | 1 | 1 | UEV | 23 | 141 | 1.59748e-43 | 147.2 | 0.0 | 2.99878e-43 | 146.3 |
| pfu_aug2.0_47.1_23320.t1 | 1 | 1 | Vps23_core | 261 | 325 | 2.9e-26 | 90.8 | 3.1e-29 | 6.6e-26 | 89.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_47.1_23320.t1 | gi|533130802|ref|XP_005380480.1| | PREDICTED: tumor susceptibility gene 101 protein isoform X2 [Chinchilla lanigera] | 0.0 |
| pfu_aug2.0_47.1_23320.t1 | gi|674047668|ref|XP_008829921.1| | PREDICTED: tumor susceptibility gene 101 protein isoform X2 [Nannospalax galili] | 0.0 |
| pfu_aug2.0_47.1_23320.t1 | gi|672036365|ref|XP_008757563.1| | PREDICTED: tumor susceptibility gene 101 protein isoform X1 [Rattus norvegicus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_47.1_23320.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_47.1_23320.t1 atggcacagtttgatgcctctgtccgtcagcttctgaataagtacaagtattcagacatatgtaaacgagatataacaaa tgccatatcacagtataaagatctgagaccagggaatgatggatttatatttaatgacggctcaaggaaagacttggtta atctggatggaaccatccctgtgatgtataaagggaacacctacaacatccctatatgtatatggatactggacacacat ccttataatcccccaatggtcttcgtcaaacccacgaacactatgcaaataaaacaaggacgcaatgttgacgccaatgg aaaagtagacttaccatatttaagggactggagatatccccagtcagatttgcttggcctaatacagattctcaccatag tttttggagaggagcctcccgtgttctcccgttcaagtcagccgtcaaatcgtcccccatatcctggtgcccaacagtcg actccctacccaatgtcaggaatttacttttgcggtctgaggatgaccgtactaatagctctgagaaatatgcagcatga agtttttatgtatagagtagcattaatgatggctgagatgaatgtcctccataaaacccagacagacctgaaggcaggga aagataagctggacacgatggtgcaggatctagagaaggaaaaatcagagctagatgccaatataatgattctgaaagaa aaagacaatgaaataaaagaggccatgagtaaactagaaggcagtgaccagttagatgtagatgaagctgttgttactac cacacctctatatagacaattactgaattcgtttgctgaggagcaggcattggatgatgcaatctattacctaggagaag ctttacggaaaaatgtcatagatatcgatgttttcttaaagcaagttcgagaattatcacgtagacaattcatgttaaga gccttgatacagaaatgtagagaaaaagctggattacctcccttagcctga |
|
Protein
| Protein ID | pfu_aug2.0_47.1_23320.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_47.1_23320.t1 MAQFDASVRQLLNKYKYSDICKRDITNAISQYKDLRPGNDGFIFNDGSRKDLVNLDGTIPVMYKGNTYNIPICIWILDTH PYNPPMVFVKPTNTMQIKQGRNVDANGKVDLPYLRDWRYPQSDLLGLIQILTIVFGEEPPVFSRSSQPSNRPPYPGAQQS TPYPMSGIYFCGLRMTVLIALRNMQHEVFMYRVALMMAEMNVLHKTQTDLKAGKDKLDTMVQDLEKEKSELDANIMILKE KDNEIKEAMSKLEGSDQLDVDEAVVTTTPLYRQLLNSFAEEQALDDAIYYLGEALRKNVIDIDVFLKQVRELSRRQFMLR ALIQKCREKAGLPPLA |
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