Gene
| Gene Model ID | pfu_aug2.0_47.1_23324 |
|---|---|
| Locus | scaffold47.1 : 261283 ... 268139 : + |
| To GenomeBrowser | scaffold47.1:261283..268139 |
| Genes list of scaffold | scaffold47.1 |
| Synonym | pfu_aug1.0_9370.1_31759 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_47.1_23324.t1 | 2 | 1 | C1q | 171 | 298 | 8.1e-36 | 122.8 | 4.2e-20 | 1.6e-16 | 60.4 |
| pfu_aug2.0_47.1_23324.t1 | 2 | 2 | C1q | 432 | 560 | 8.1e-36 | 122.8 | 1.3e-20 | 4.7e-17 | 62.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_47.1_23324.t1 | gi|542244976|ref|XP_003454798.2| | PREDICTED: collagen alpha-2(VIII) chain-like [Oreochromis niloticus] | 3.0e-09 |
| pfu_aug2.0_47.1_23324.t1 | gi|551529265|ref|XP_005816097.1| | PREDICTED: collagen alpha-1(VIII) chain-like [Xiphophorus maculatus] | 3.0e-09 |
| pfu_aug2.0_47.1_23324.t1 | gi|551529263|ref|XP_005816096.1| | PREDICTED: collagen alpha-1(VIII) chain-like [Xiphophorus maculatus] | 4.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_47.1_23324.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_47.1_23324.t1 atgttccttcgtttgatactttcgtgctttttcttggactttgcgttctcctcgttcgctagaaaagatgagtttgaaaa tgccttagaaatactgcatgagaagtatactaaacgtattgatgaactgcagaacaagtttgaggagaaatttagaattc aagacgagcgcaatagaaaccaagacgagcgaattcgaattttagaagagcgcacaagaaatcaagacgagagcattaac tcactacaaaaagatttttccgagaaatcagaacttgtgaaatatctgtctgaaaagttgagttacgttgaccaaaatat cggtgttctgaaatctcaaatcgaaaatgattttgaaaataagacgatgtcttctcggataccacaaaaacgggacgcaa gcttggcacatcaaatcaaacagaaaactcttcattctgaaaaaccagaattctatcgtcaagaaagaatacttctgcca accaatacaatccagtcaagcaaggtcattgcattttatgcatacttgtcgtcaaatctccctgcggcaaatgctggtcc gggccacgtactagtttttgatgttgccaaaacaaatataggaaatgcttatcaccctcacactggcgtctttatagtcc caaagacgggagtctatgtattcacctggggtttctatattggtggaacagacagttatcactccctagaacttgtggtt aatgccgaggtttggggaattgtccatacgcactcggtagcggcgtcagattataaagaatctacaggcgttgttgtagt ccaagccaacgctggggatgacgtgtttgtgagatcttctgctacctacgcccatggaagtattaacagtgaccatgctt caaaaactttctttgcagagcagacaagcacagaaagagacggaaaagggacaaggaacgtcaacagccaacacagaaac aacaaacacacaggactacacataaaccaacgagacccatgggcaaccggtgccaacttaggacggccatctgccacgga aatagcagaagatgatttatctgagaaaagtgaaatcattaatggacttaaagaagagataaaaatattacagtccaagc aaggaatggcgaatgcagatcaaaatgctaagatcaatgacttcacgcatttaagcagaaacggaactttgaaaacaaaa agccaatacagagacagtttgaatacaattcgtcaagaaagaatgctagctccaaatagtgtgatgaaccaaccatccca aagtaatattgtagcattctatgcattcatgtctaagactctccctgcttcacaagctggtccaaaccatgtgctcatat atgacactgtcaaaactaatatccagaatgcctatcatccacacactggagtgttcatagtcccagaggctggagcttac gtctttacttggagtcttttcattggcgagtcaaataatcatcactcccttgaactcattgtgaattcagaagtatgggg tgaaattcatgctcacactacatcaggcgtggtctcagaatctactggtatagctgttgtccaggctaatgagggtgatg acgtatatgtgagatctgccactgtttcaagcaatggtgacgtatggagtaacatctacggaaagacgttcttcgccggt tggaagttgtga |
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Protein
| Protein ID | pfu_aug2.0_47.1_23324.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_47.1_23324.t1 MFLRLILSCFFLDFAFSSFARKDEFENALEILHEKYTKRIDELQNKFEEKFRIQDERNRNQDERIRILEERTRNQDESIN SLQKDFSEKSELVKYLSEKLSYVDQNIGVLKSQIENDFENKTMSSRIPQKRDASLAHQIKQKTLHSEKPEFYRQERILLP TNTIQSSKVIAFYAYLSSNLPAANAGPGHVLVFDVAKTNIGNAYHPHTGVFIVPKTGVYVFTWGFYIGGTDSYHSLELVV NAEVWGIVHTHSVAASDYKESTGVVVVQANAGDDVFVRSSATYAHGSINSDHASKTFFAEQTSTERDGKGTRNVNSQHRN NKHTGLHINQRDPWATGANLGRPSATEIAEDDLSEKSEIINGLKEEIKILQSKQGMANADQNAKINDFTHLSRNGTLKTK SQYRDSLNTIRQERMLAPNSVMNQPSQSNIVAFYAFMSKTLPASQAGPNHVLIYDTVKTNIQNAYHPHTGVFIVPEAGAY VFTWSLFIGESNNHHSLELIVNSEVWGEIHAHTTSGVVSESTGIAVVQANEGDDVYVRSATVSSNGDVWSNIYGKTFFAG WKL |
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