Gene
| Gene Model ID | pfu_aug2.0_47.1_23325 |
|---|---|
| Locus | scaffold47.1 : 273214 ... 275232 : - |
| To GenomeBrowser | scaffold47.1:273214..275232 |
| Genes list of scaffold | scaffold47.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_47.1_23325.t1 | 2 | 1 | Retrotrans_gag | 7 | 25 | 1.7e-09 | 37.6 | 0.017 | 120.0 | 2.7 |
| pfu_aug2.0_47.1_23325.t1 | 2 | 2 | Retrotrans_gag | 42 | 116 | 1.7e-09 | 37.6 | 6.5e-12 | 4.9e-08 | 32.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_47.1_23325.t1 | gi|675882114|ref|XP_009026559.1| | hypothetical protein HELRODRAFT_179480 [Helobdella robusta] | 1.0e-07 |
| pfu_aug2.0_47.1_23325.t1 | gi|512899702|ref|XP_004924711.1| | 2.0e-07 | |
| pfu_aug2.0_47.1_23325.t1 | gi|675883574|ref|XP_009027289.1| | hypothetical protein HELRODRAFT_163959 [Helobdella robusta] | 8.0e-07 |
Transcript
| Transcript ID | pfu_aug2.0_47.1_23325.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_47.1_23325.t1 atggagtctattcccacaaccattagatataatgggacagacaactgggaagctttcaaaatgaaattcactgtatttgc tcaagcaaaacagtggactgaattggaaaggagagggtatctttgctggtgcttggaaggtcaggccagtgaattttaca caagtgtggtaaatagagaccctggtgtaaggtttgctgacttgatgacaaaattagagatgagatttggggatcgtgaa ccgccagaaaccacacaggtaaaattaagcaccctggttcaaaacccagatgaaagcttggaggaatggagtgatcgtgt gcagcaatttgcaacaaaagcattccaaggcttgccagatgacttccaaaataagcaagtaatttacaggatttgccacg gatacctggaccaaaatgctgggcagtttgtggtgaacctgaatttgagcagtattctggaagttatagataggattaaa cgctatcagtttaatcatctggccatttcaaaggtagaggataagggagtggtctgtagtccttattctggagaccatga ttataaagaaatcacatacaaagctgtatggctaaaaggccaagctagttaa |
|
Protein
| Protein ID | pfu_aug2.0_47.1_23325.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_47.1_23325.t1 MESIPTTIRYNGTDNWEAFKMKFTVFAQAKQWTELERRGYLCWCLEGQASEFYTSVVNRDPGVRFADLMTKLEMRFGDRE PPETTQVKLSTLVQNPDESLEEWSDRVQQFATKAFQGLPDDFQNKQVIYRICHGYLDQNAGQFVVNLNLSSILEVIDRIK RYQFNHLAISKVEDKGVVCSPYSGDHDYKEITYKAVWLKGQAS |
|